RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RNF152Q8N8N0 203 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 BEND2Q8NDZ0 799 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 CLEC7AQ9BXN2 247 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 MRPL36Q9P0J6 103 aaKnown RBP8.1□□□□□ -1.11
VPS53-220ENST00000576149 IGHV1-3A0A0C4DH29 117 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 BUB1B-PAK6H3BSN5 160 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 COX7A2P2O60397 106 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 IGHV3-48P01763 117 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 RBP4P02753 201 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 ERVFC1-1P60608 527 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 OR5I1Q13606 314 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 C10orf113Q5VZT2 155 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 PATE2Q6UY27 113 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 OR5AU1Q8NGC0 362 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 INSIG2Q9Y5U4 225 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 V9GYV3 84 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 CCL21O00585 134 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 CNTFRP26992 372 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 UBE2L3P68036 154 aaKnown RBP8.09□□□□□ -1.11
VPS53-220ENST00000576149 PRB3Q04118 309 aaPredicted RBP8.09□□□□□ -1.11
VPS53-220ENST00000576149 JOSD1Q15040 202 aaPredicted RBP8.09□□□□□ -1.11
VPS53-220ENST00000576149 ETFRF1Q6IPR1 90 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 MRPL41Q8IXM3 137 aaKnown RBP8.09□□□□□ -1.11
VPS53-220ENST00000576149 ZNF355PQ9NSJ1 428 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 SIGLEC9Q9Y336 463 aa8.09□□□□□ -1.11
VPS53-220ENST00000576149 PTPRQQ9UMZ3 2332 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 PPIAL4CA0A0B4J2A2 164 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 PPIAL4GP0DN37 164 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 RPL27AP46776 148 aaKnown RBP8.08□□□□□ -1.12
VPS53-220ENST00000576149 MFAP2P55001 183 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 UCNP55089 124 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 LGALS4P56470 323 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 TIGITQ495A1 244 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 HCP5Q6MZN7 132 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 LHFPL4Q7Z7J7 247 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 ST6GALNAC3Q8NDV1 305 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 OR5R1Q8NH85 324 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 C8orf46Q8TAG6 207 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 GCGP01275 180 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 IGLV2-8P01709 118 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 RD3LP0DJH9 198 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 COMPP49747 757 aaPredicted RBP8.08□□□□□ -1.12
VPS53-220ENST00000576149 TNXAQ16473 311 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 RPEL1Q2QD12 228 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 RUSC1-AS1Q66K80 236 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 IGF2BP2-AS1Q96M15 143 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 CITED1Q99966 193 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 PAXXQ9BUH6 204 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 OSTCQ9NRP0 149 aa8.08□□□□□ -1.12
VPS53-220ENST00000576149 POLEQ07864 2286 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 A0A1B0GV90 55 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 PF4P02776 101 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 PYYP10082 97 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 GZMBP10144 247 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 ADMP35318 185 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 KLRB1Q12918 225 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 CDSNQ15517 529 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 GBGT1Q8N5D6 347 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 TMEM18Q96B42 140 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 MISP3Q96FF7 219 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 TNFRSF19Q9NS68 423 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 RAXQ9Y2V3 346 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 ISLRO14498 428 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 CBLN1P23435 193 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 COX7A1P24310 79 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 ADORA2A-AS1P86434 159 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 LINC00305Q7Z4B0 112 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 PPP1R27Q86WC6 154 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 LY6G5BQ8NDX9 201 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 GLMPQ8WWB7 406 aa8.07□□□□□ -1.12
VPS53-220ENST00000576149 COL25A1Q9BXS0 654 aaPredicted RBP8.07□□□□□ -1.12
VPS53-220ENST00000576149 AMMECR1Q9Y4X0 333 aaPredicted RBP8.07□□□□□ -1.12
VPS53-220ENST00000576149 LY6LH3BQJ8 138 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 TAS2R60P59551 318 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 PAX2Q02962 417 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 C9orf152Q5JTZ5 239 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 TMEM116Q8NCL8 245 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 OR8B3Q8NGG8 313 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 RPEQ96AT9 228 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 FXYD5Q96DB9 178 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 RNF125Q96EQ8 232 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 OR8B2Q96RD0 313 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 TRGV9Q99603 122 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 RNASE7Q9H1E1 156 aaKnown RBP8.06□□□□□ -1.12
VPS53-220ENST00000576149 CDC42EP3Q9UKI2 254 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 KALRNO60229 2985 aa8.06□□□□□ -1.12
VPS53-220ENST00000576149 TLN1Q9Y490 2541 aaKnown RBP8.06□□□□□ -1.12
VPS53-220ENST00000576149 TEX22C9J3V5 150 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 CORTO00230 105 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 MOSP00540 346 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 CLEC3BP05452 202 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 OXLD1Q5BKU9 147 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 C19orf35Q6ZS72 473 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 ZNF329Q86UD4 541 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 OR8I2Q8N0Y5 310 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 OR1L6Q8NGR2 347 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 C22orf15Q8WYQ4 148 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 RNF5Q99942 180 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 HIF1ANQ9NWT6 349 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 F11RQ9Y624 299 aaKnown RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms