RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 HIST1H2BOP23527 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 MC5RP33032 325 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BBP33778 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 MFAP2P55001 183 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BDP58876 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BCP62807 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST2H2BEQ16778 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.96□□□□□ -1.13
VPS53-206ENST00000570359 LINC01551Q86U37 167 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST3H2BBQ8N257 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 OR5AU1Q8NGC0 362 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 OR10D4PQ8NGN7 298 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BHQ93079 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BNQ99877 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 HIST1H2BMQ99879 126 aa7.96□□□□□ -1.13
VPS53-206ENST00000570359 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.96□□□□□ -1.13
VPS53-206ENST00000570359 PDE6DO43924 150 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 MT-CO2P00403 227 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 IGLV1-47P01700 117 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 MGST1P10620 155 aaKnown RBP7.96□□□□□ -1.14
VPS53-206ENST00000570359 GPR6P46095 362 aaPredicted RBP7.96□□□□□ -1.14
VPS53-206ENST00000570359 SLC35B1P78383 322 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 PRR31Q5SQ13 230 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 LINC00479Q96M42 142 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 NDUFAF3Q9BU61 184 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 SIGLEC9Q9Y336 463 aa7.96□□□□□ -1.14
VPS53-206ENST00000570359 MDFIC2A0A1B0GVS7 189 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 A8MWP6 167 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 PPP1R2P9O14990 202 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 FXYD3Q14802 87 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 PPP1R27Q86WC6 154 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 LINC00311Q8N616 119 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 OCC1Q8TAD7 63 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 ZNF503Q96F45 646 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 ZNF355PQ9NSJ1 428 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 TRAV34A0A0B4J273 112 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 IGLC7A0M8Q6 106 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 TGOLN2O43493 480 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 IGHV3-23P01764 117 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 RBP4P02753 201 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 ZFP36P26651 326 aaKnown RBP7.95□□□□□ -1.14
VPS53-206ENST00000570359 SUB1P53999 127 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS53-206ENST00000570359 TCL1AP56279 114 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 MRGPRG-AS1Q2M3A8 158 aa7.95□□□□□ -1.14
VPS53-206ENST00000570359 PPP5D1E7EU14 171 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 HTR1DP28221 377 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 C10orf113Q5VZT2 155 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 PQLC2Q6ZP29 291 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 GPR61Q9BZJ8 451 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 TNFRSF19Q9NS68 423 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 TECRQ9NZ01 308 aaKnown RBP7.94□□□□□ -1.14
VPS53-206ENST00000570359 LRRK2Q5S007 2527 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 ZNF320A2RRD8 509 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 SH2D7A6NKC9 451 aaPredicted RBP7.94□□□□□ -1.14
VPS53-206ENST00000570359 GGTLC3B5MD39 225 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 LYZP61626 148 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 GNG5P63218 68 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 VMO1Q7Z5L0 202 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 MMD2Q8IY49 270 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 ZNF596Q8TC21 504 aa7.94□□□□□ -1.14
VPS53-206ENST00000570359 RNASEH2CQ8TDP1 164 aaKnown RBP7.94□□□□□ -1.14
VPS53-206ENST00000570359 SRSF12Q8WXF0 261 aaKnown RBP7.94□□□□□ -1.14
VPS53-206ENST00000570359 LGALS7P47929 136 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 RANP62826 216 aaKnown RBP7.93□□□□□ -1.14
VPS53-206ENST00000570359 CENPWQ5EE01 88 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 LINC00305Q7Z4B0 112 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 SGMS2Q8NHU3 365 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 DNAJC4Q9NNZ3 241 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 SERTAD4Q9NUC0 356 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 ZNF462Q96JM2 2506 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 EPG5Q9HCE0 2579 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 IGHV3OR16-8A0A075B7F1 116 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 K7EN84 100 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 FABP4P15090 132 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 TPTE2P1Q5T6R2 138 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 C11orf71Q6IPW1 123 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 PRR27Q6MZM9 219 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 DYNAPQ8N1N2 210 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 OR2T10Q8NGZ9 312 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 ITLN2Q8WWU7 325 aaPredicted RBP7.93□□□□□ -1.14
VPS53-206ENST00000570359 SFRP2Q96HF1 295 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 SLC25A2Q9BXI2 301 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 BPESC1Q9GZL8 116 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 RNASE7Q9H1E1 156 aaKnown RBP7.93□□□□□ -1.14
VPS53-206ENST00000570359 IGKV1D-37A0A075B6S9 117 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 IGHV3-35A0A0C4DH35 117 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 A0A1B0GUS0 222 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 VENTXO95231 258 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 PFN1P07737 140 aaKnown RBP7.93□□□□□ -1.14
VPS53-206ENST00000570359 C8orf88P0DMB2 117 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 COMPP49747 757 aaPredicted RBP7.93□□□□□ -1.14
VPS53-206ENST00000570359 TAS2R45P59539 299 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 ERVFC1-1P60608 527 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 PATE2Q6UY27 113 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 ASCL2Q99929 193 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 CTDSP1Q9GZU7 261 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 PRORYQ9H606 182 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 CHODLQ9H9P2 273 aa7.93□□□□□ -1.14
VPS53-206ENST00000570359 AMMECR1Q9Y4X0 333 aaPredicted RBP7.93□□□□□ -1.14
VPS53-206ENST00000570359 CSPG4Q6UVK1 2322 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms