RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 HYDINQ4G0P3 5121 aa16.54■□□□□ 0.24
CLN3-232ENST00000568443 NXPH3O95157 252 aa16.54■□□□□ 0.24
CLN3-232ENST00000568443 SLC25A4P12235 298 aa16.54■□□□□ 0.24
CLN3-232ENST00000568443 CRYBB3P26998 211 aa16.54■□□□□ 0.24
CLN3-232ENST00000568443 NOXA1Q86UR1 476 aa16.54■□□□□ 0.24
CLN3-232ENST00000568443 PRR13Q9NZ81 148 aa16.54■□□□□ 0.24
CLN3-232ENST00000568443 RND2P52198 227 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 DEFB131AP59861 70 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 ETFRF1Q6IPR1 90 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 PRSS54Q6PEW0 395 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 OR1S2Q8NGQ3 325 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 Q8WTZ3 238 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 GATAD1Q8WUU5 269 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 GRAMD2BQ96HH9 432 aa16.53■□□□□ 0.24
CLN3-232ENST00000568443 ATF4P18848 351 aaPredicted RBP16.52■□□□□ 0.24
CLN3-232ENST00000568443 P2RY1P47900 373 aa16.52■□□□□ 0.24
CLN3-232ENST00000568443 NMSQ5H8A3 153 aa16.52■□□□□ 0.24
CLN3-232ENST00000568443 LEMD1Q68G75 181 aa16.52■□□□□ 0.24
CLN3-232ENST00000568443 STXBP6Q8NFX7 210 aa16.52■□□□□ 0.24
CLN3-232ENST00000568443 RARRES2Q99969 163 aa16.52■□□□□ 0.24
CLN3-232ENST00000568443 A0A0B4J2A0 478 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 NUPR2A6NF83 97 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 IGLC1P0CG04 106 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 ANXA3P12429 323 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 NPY1RP25929 384 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 OR10J1P30954 320 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 FAUP35544 74 aaKnown RBP16.51■□□□□ 0.23
CLN3-232ENST00000568443 CCR6P51684 374 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 LYZL2Q7Z4W2 148 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 FAM24BQ8N5W8 94 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 SHPKQ9UHJ6 478 aa16.51■□□□□ 0.23
CLN3-232ENST00000568443 IFNA10P01566 189 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 YPEL3P61236 119 aaPredicted RBP16.5■□□□□ 0.23
CLN3-232ENST00000568443 SUPT4H1P63272 117 aaKnown RBP16.5■□□□□ 0.23
CLN3-232ENST00000568443 SRPXP78539 464 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 SMCO1Q147U7 214 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 PYDC2Q56P42 97 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 LGI3Q8N145 548 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 TMEM170AQ8WVE7 144 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 U3KQ87 197 aa16.5■□□□□ 0.23
CLN3-232ENST00000568443 CA1P00915 261 aaPredicted RBP16.49■□□□□ 0.23
CLN3-232ENST00000568443 EIF2B2P49770 351 aaKnown RBP16.49■□□□□ 0.23
CLN3-232ENST00000568443 AP3S2P59780 193 aa16.49■□□□□ 0.23
CLN3-232ENST00000568443 RBMS2Q15434 407 aaKnown RBP16.49■□□□□ 0.23
CLN3-232ENST00000568443 CEMP1Q6PRD7 247 aaPredicted RBP16.49■□□□□ 0.23
CLN3-232ENST00000568443 STHQ8IWL8 128 aa16.49■□□□□ 0.23
CLN3-232ENST00000568443 NPIPB3Q92617 1050 aa16.49■□□□□ 0.23
CLN3-232ENST00000568443 ACY3Q96HD9 319 aa16.49■□□□□ 0.23
CLN3-232ENST00000568443 HSPB7Q9UBY9 170 aa16.49■□□□□ 0.23
CLN3-232ENST00000568443 ALMS1Q8TCU4 4167 aa16.48■□□□□ 0.23
CLN3-232ENST00000568443 CCDC160A6NGH7 325 aa16.48■□□□□ 0.23
CLN3-232ENST00000568443 K7EQG2 157 aa16.48■□□□□ 0.23
CLN3-232ENST00000568443 OR11H2Q8NH07 326 aa16.48■□□□□ 0.23
CLN3-232ENST00000568443 DTD1Q8TEA8 209 aa16.48■□□□□ 0.23
CLN3-232ENST00000568443 RBKSQ9H477 322 aa16.48■□□□□ 0.23
CLN3-232ENST00000568443 PIGBOS1A0A0B4J2F0 54 aa16.47■□□□□ 0.23
CLN3-232ENST00000568443 HELTA6NFD8 242 aa16.47■□□□□ 0.23
CLN3-232ENST00000568443 HNRNPCP07910 306 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLN3-232ENST00000568443 KLF9Q13886 244 aaPredicted RBP16.47■□□□□ 0.23
CLN3-232ENST00000568443 TMED4Q7Z7H5 227 aa16.47■□□□□ 0.23
CLN3-232ENST00000568443 TOMM5Q8N4H5 51 aa16.47■□□□□ 0.23
CLN3-232ENST00000568443 OR1S1Q8NH92 325 aa16.47■□□□□ 0.23
CLN3-232ENST00000568443 KLK5Q9Y337 293 aaPredicted RBP16.47■□□□□ 0.23
CLN3-232ENST00000568443 U3KQE9 123 aa16.47■□□□□ 0.23
CLN3-232ENST00000568443 EPPK1P58107 5090 aaKnown RBP16.46■□□□□ 0.23
CLN3-232ENST00000568443 IL4P05112 153 aa16.46■□□□□ 0.23
CLN3-232ENST00000568443 ZNF688P0C7X2 276 aa16.46■□□□□ 0.23
CLN3-232ENST00000568443 RD3LP0DJH9 198 aa16.46■□□□□ 0.23
CLN3-232ENST00000568443 S100A5P33763 92 aa16.46■□□□□ 0.23
CLN3-232ENST00000568443 AP2S1P53680 142 aaPredicted RBP16.46■□□□□ 0.23
CLN3-232ENST00000568443 IFNA4P05014 189 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 DHRS2Q13268 280 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 TMEM128Q5BJH2 165 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 C16orf54Q6UWD8 224 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 DCANP1Q8TF63 244 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 LINC00476Q8WZB0 136 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 TRIM63Q969Q1 353 aa16.45■□□□□ 0.22
CLN3-232ENST00000568443 TOMM40O96008 361 aa16.44■□□□□ 0.22
CLN3-232ENST00000568443 ATP5IP56385 69 aaPredicted RBP16.44■□□□□ 0.22
CLN3-232ENST00000568443 USF2Q15853 346 aaPredicted RBP16.44■□□□□ 0.22
CLN3-232ENST00000568443 V9GYH0 126 aa16.44■□□□□ 0.22
CLN3-232ENST00000568443 AGRNO00468 2067 aa16.44■□□□□ 0.22
CLN3-232ENST00000568443 LY6G6CO95867 125 aa16.43■□□□□ 0.22
CLN3-232ENST00000568443 PHLDA1Q8WV24 401 aaPredicted RBP16.43■□□□□ 0.22
CLN3-232ENST00000568443 GLMPQ8WWB7 406 aa16.43■□□□□ 0.22
CLN3-232ENST00000568443 SLC25A21Q9BQT8 299 aaPredicted RBP16.43■□□□□ 0.22
CLN3-232ENST00000568443 DUXBA0A1W2PPF3 345 aa16.42■□□□□ 0.22
CLN3-232ENST00000568443 KNCNA6PVL3 124 aa16.42■□□□□ 0.22
CLN3-232ENST00000568443 PSG1P11464 419 aa16.42■□□□□ 0.22
CLN3-232ENST00000568443 VAMP1P23763 118 aa16.42■□□□□ 0.22
CLN3-232ENST00000568443 TRPT1Q86TN4 253 aaKnown RBP16.42■□□□□ 0.22
CLN3-232ENST00000568443 C11orf45Q8TAV5 145 aa16.42■□□□□ 0.22
CLN3-232ENST00000568443 C11orf68Q9H3H3 251 aaKnown RBP16.42■□□□□ 0.22
CLN3-232ENST00000568443 GPX4P36969 197 aaPredicted RBP16.41■□□□□ 0.22
CLN3-232ENST00000568443 ZNF79Q15937 498 aa16.41■□□□□ 0.22
CLN3-232ENST00000568443 TMEM41BQ5BJD5 291 aa16.41■□□□□ 0.22
CLN3-232ENST00000568443 ACTL10Q5JWF8 245 aa16.41■□□□□ 0.22
CLN3-232ENST00000568443 MORN3Q6PF18 240 aaPredicted RBP16.41■□□□□ 0.22
CLN3-232ENST00000568443 OR51G1Q8NGK1 321 aa16.41■□□□□ 0.22
CLN3-232ENST00000568443 DEDD2Q8WXF8 326 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms