RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ETFRF1Q6IPR1 90 aa12.25□□□□□ -0.45
CLN3-231ENST00000568422 CENPSQ8N2Z9 138 aa12.25□□□□□ -0.45
CLN3-231ENST00000568422 GLYATL2Q8WU03 294 aa12.25□□□□□ -0.45
CLN3-231ENST00000568422 HEYLQ9NQ87 328 aaPredicted RBP12.25□□□□□ -0.45
CLN3-231ENST00000568422 IGLC1P0CG04 106 aa12.24□□□□□ -0.45
CLN3-231ENST00000568422 GPR107Q5VW38 600 aa12.24□□□□□ -0.45
CLN3-231ENST00000568422 PRSS54Q6PEW0 395 aa12.24□□□□□ -0.45
CLN3-231ENST00000568422 NOXA1Q86UR1 476 aa12.24□□□□□ -0.45
CLN3-231ENST00000568422 RTBDNQ9BSG5 229 aaPredicted RBP12.24□□□□□ -0.45
CLN3-231ENST00000568422 NAA50Q9GZZ1 169 aaKnown RBP12.24□□□□□ -0.45
CLN3-231ENST00000568422 NAA60Q9H7X0 242 aa12.24□□□□□ -0.45
CLN3-231ENST00000568422 SEPSECSQ9HD40 501 aaKnown RBP12.24□□□□□ -0.45
CLN3-231ENST00000568422 IGHV4-28A0A0C4DH34 117 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 IGLL5B9A064 214 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 DISC1C4P0D8 188 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 HNRNPCP07910 306 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLN3-231ENST00000568422 RBMY1A1P0DJD3 496 aaKnown RBP12.23□□□□□ -0.45
CLN3-231ENST00000568422 RBMY1CP0DJD4 496 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 OR10J1P30954 320 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 RND2P52198 227 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 DHRS2Q13268 280 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 RBMY1FQ15415 496 aaKnown RBP12.23□□□□□ -0.45
CLN3-231ENST00000568422 ACTL10Q5JWF8 245 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 C16orf54Q6UWD8 224 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 SELENOHQ8IZQ5 122 aaKnown RBP12.23□□□□□ -0.45
CLN3-231ENST00000568422 SLC24A4Q8NFF2 622 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 CACNG5Q9UF02 275 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 APLNQ9ULZ1 77 aa12.23□□□□□ -0.45
CLN3-231ENST00000568422 KNCNA6PVL3 124 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 CEBPZOSA8MTT3 80 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 RGS5O15539 181 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 SNRPD3P62318 126 aaKnown RBP12.22□□□□□ -0.45
CLN3-231ENST00000568422 LHFPL5Q8TAF8 219 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 GLMPQ8WWB7 406 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 RABL2AQ9UBK7 228 aaPredicted RBP12.22□□□□□ -0.45
CLN3-231ENST00000568422 RABL2BQ9UNT1 228 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 X6R8D5 127 aa12.22□□□□□ -0.45
CLN3-231ENST00000568422 CRYM-AS1A6NIL9 109 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 GSTZ1O43708 216 aaPredicted RBP12.21□□□□□ -0.45
CLN3-231ENST00000568422 AKAIN1P0CW23 69 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 C4BPBP20851 252 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 HLA-DMBP28068 263 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 NUTF2P61970 127 aaKnown RBP12.21□□□□□ -0.45
CLN3-231ENST00000568422 PRR20EP86478 221 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 PRR20CP86479 221 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 PRR20DP86480 221 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 PRR20BP86481 221 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 PRR20AP86496 221 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 TMEM268Q5VZI3 342 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 CSNK1G2-AS1Q8NCQ2 148 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 SMIM4Q8WVI0 70 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 GPR146Q96CH1 333 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 RAB40CQ96S21 281 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 PRRT1Q99946 306 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 C1QTNF4Q9BXJ3 329 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 MIXL1Q9H2W2 232 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 TBC1D24Q9ULP9 559 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 GPR132Q9UNW8 380 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 KCNIP3Q9Y2W7 256 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 TMEM56-RWDD3S4R434 201 aa12.21□□□□□ -0.45
CLN3-231ENST00000568422 TRAV10A0A0B4J240 114 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 CTDSPLO15194 276 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 IL4P05112 153 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 NMSQ5H8A3 153 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 PSMG4Q5JS54 123 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 FAAP20Q6NZ36 180 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 IL22RA2Q969J5 263 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 NRN1Q9NPD7 142 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 VPS13DQ5THJ4 4388 aa12.2□□□□□ -0.46
CLN3-231ENST00000568422 DNAH10Q8IVF4 4471 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 TOMM40O96008 361 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 RD3LP0DJH9 198 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 SULT1A3P0DMM9 295 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 SULT1A4P0DMN0 295 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 NPY1RP25929 384 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 NUP62P37198 522 aaPredicted RBP12.19□□□□□ -0.46
CLN3-231ENST00000568422 TMEM170AQ8WVE7 144 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 NPIPB3Q92617 1050 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 PFDN2Q9UHV9 154 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 U3KQ87 197 aa12.19□□□□□ -0.46
CLN3-231ENST00000568422 ELOA3CA0A087WX78 387 aaPredicted RBP12.18□□□□□ -0.46
CLN3-231ENST00000568422 FAM90A26D6RGX4 464 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 BUB3O43684 328 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 SMIM18P0DKX4 95 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 USF2Q15853 346 aaPredicted RBP12.18□□□□□ -0.46
CLN3-231ENST00000568422 SIGLEC15Q6ZMC9 328 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 Q6ZTC4 211 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 OR4C16Q8NGL9 310 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 ACY3Q96HD9 319 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 SCGB3A2Q96PL1 93 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 CLEC5AQ9NY25 188 aa12.18□□□□□ -0.46
CLN3-231ENST00000568422 IGHV4-4A0A075B6R2 117 aa12.17□□□□□ -0.46
CLN3-231ENST00000568422 CTDSP2O14595 271 aa12.17□□□□□ -0.46
CLN3-231ENST00000568422 IFNA10P01566 189 aa12.17□□□□□ -0.46
CLN3-231ENST00000568422 ATP5IP56385 69 aaPredicted RBP12.17□□□□□ -0.46
CLN3-231ENST00000568422 RNF126Q9BV68 326 aa12.17□□□□□ -0.46
CLN3-231ENST00000568422 SCP2D1Q9UJQ7 156 aa12.17□□□□□ -0.46
CLN3-231ENST00000568422 PIGBOS1A0A0B4J2F0 54 aa12.16□□□□□ -0.46
CLN3-231ENST00000568422 H3BMM0 161 aa12.16□□□□□ -0.46
CLN3-231ENST00000568422 PSG1P11464 419 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms