RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DHODHQ02127 395 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 C2orf83Q53S99 150 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 DCANP1Q8TF63 244 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 SMIM4Q8WVI0 70 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 GPR146Q96CH1 333 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 GRAMD2BQ96HH9 432 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 NARS2Q96I59 477 aaKnown RBP11.72□□□□□ -0.53
CLN3-229ENST00000567963 HEYLQ9NQ87 328 aaPredicted RBP11.72□□□□□ -0.53
CLN3-229ENST00000567963 CCDC59Q9P031 241 aaKnown RBP11.72□□□□□ -0.53
CLN3-229ENST00000567963 CACNG5Q9UF02 275 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 FBXL17Q9UF56 701 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 GPR132Q9UNW8 380 aa11.72□□□□□ -0.53
CLN3-229ENST00000567963 CRYM-AS1A6NIL9 109 aa11.71□□□□□ -0.53
CLN3-229ENST00000567963 GIG44P09565 113 aaPredicted RBP11.71□□□□□ -0.53
CLN3-229ENST00000567963 IGLC1P0CG04 106 aa11.71□□□□□ -0.53
CLN3-229ENST00000567963 PRSS54Q6PEW0 395 aa11.71□□□□□ -0.53
CLN3-229ENST00000567963 TRPT1Q86TN4 253 aaKnown RBP11.71□□□□□ -0.53
CLN3-229ENST00000567963 OR4C16Q8NGL9 310 aa11.71□□□□□ -0.53
CLN3-229ENST00000567963 RNASEH2CQ8TDP1 164 aaKnown RBP11.71□□□□□ -0.53
CLN3-229ENST00000567963 U3KQE9 123 aa11.71□□□□□ -0.53
CLN3-229ENST00000567963 CTDSPLO15194 276 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 AKAIN1P0CW23 69 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 SLC25A4P12235 298 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 TMEM268Q5VZI3 342 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 SLC24A4Q8NFF2 622 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 OR1S2Q8NGQ3 325 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 Q8WTZ3 238 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 TMEM56-RWDD3S4R434 201 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 CEBPZOSA8MTT3 80 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 DEDDO75618 318 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 ZNF688P0C7X2 276 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 SPP1P10451 314 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 RND2P52198 227 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 YPEL3P61236 119 aaPredicted RBP11.7□□□□□ -0.54
CLN3-229ENST00000567963 TMEM41BQ5BJD5 291 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 MORN3Q6PF18 240 aaPredicted RBP11.7□□□□□ -0.54
CLN3-229ENST00000567963 Q8NAQ8 132 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 TMEM170AQ8WVE7 144 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 PRRT1Q99946 306 aa11.7□□□□□ -0.54
CLN3-229ENST00000567963 SLIRPQ9GZT3 109 aaKnown RBP11.7□□□□□ -0.54
CLN3-229ENST00000567963 KNCNA6PVL3 124 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 HNRNPCP07910 306 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLN3-229ENST00000567963 OR10J1P30954 320 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 EIF2B2P49770 351 aaKnown RBP11.69□□□□□ -0.54
CLN3-229ENST00000567963 AP2S1P53680 142 aaPredicted RBP11.69□□□□□ -0.54
CLN3-229ENST00000567963 IL18Q14116 193 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 CNPY1Q3B7I2 92 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 C16orf54Q6UWD8 224 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 OR51S1Q8NGJ8 323 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 C2CD4CQ8TF44 421 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 DIRAS2Q96HU8 199 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 RABL2AQ9UBK7 228 aaPredicted RBP11.69□□□□□ -0.54
CLN3-229ENST00000567963 RABL2BQ9UNT1 228 aa11.69□□□□□ -0.54
CLN3-229ENST00000567963 HELTA6NFD8 242 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 DHRS2Q13268 280 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 NMSQ5H8A3 153 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 ETFRF1Q6IPR1 90 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 GLMPQ8WWB7 406 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 IL22RA2Q969J5 263 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 HRH4Q9H3N8 390 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 CACFD1Q9UGQ2 172 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 KCNIP3Q9Y2W7 256 aa11.68□□□□□ -0.54
CLN3-229ENST00000567963 ZNF705EA8MWA4 302 aaPredicted RBP11.67□□□□□ -0.54
CLN3-229ENST00000567963 NXPH3O95157 252 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 RBMY1A1P0DJD3 496 aaKnown RBP11.67□□□□□ -0.54
CLN3-229ENST00000567963 RBMY1CP0DJD4 496 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 MIFP14174 115 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 C4BPBP20851 252 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 NPY1RP25929 384 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 TCTAP57738 103 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 RBMY1FQ15415 496 aaKnown RBP11.67□□□□□ -0.54
CLN3-229ENST00000567963 USF2Q15853 346 aaPredicted RBP11.67□□□□□ -0.54
CLN3-229ENST00000567963 ACTL10Q5JWF8 245 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 NOXA1Q86UR1 476 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 NPIPB3Q92617 1050 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 PTTG2Q9NZH5 202 aa11.67□□□□□ -0.54
CLN3-229ENST00000567963 IGHV4-28A0A0C4DH34 117 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 ANKRD20A5PA0PJZ0 165 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 C11orf94C9JXX5 98 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 IL4P05112 153 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 SULT1A3P0DMM9 295 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 SULT1A4P0DMN0 295 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 CSNK1G2-AS1Q8NCQ2 148 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 RAB40CQ96S21 281 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 PRR13Q9NZ81 148 aa11.66□□□□□ -0.54
CLN3-229ENST00000567963 BUB3O43684 328 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 GSTZ1O43708 216 aaPredicted RBP11.65□□□□□ -0.54
CLN3-229ENST00000567963 TOMM40O96008 361 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 RD3LP0DJH9 198 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 PSMG4Q5JS54 123 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 ACY3Q96HD9 319 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 CLEC5AQ9NY25 188 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 SCP2D1Q9UJQ7 156 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 U3KQ87 197 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 X6R8D5 127 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 VPS13DQ5THJ4 4388 aa11.65□□□□□ -0.54
CLN3-229ENST00000567963 IGLL5B9A064 214 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 IFNA10P01566 189 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 PRR20EP86478 221 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 PRR20CP86479 221 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms