RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	RTBDN	Q9BSG5	229 aa	Predicted RBP	10.92	□□□□□ -0.66
CLN3-222	ENST00000566083	GPR132	Q9UNW8	380 aa		10.92	□□□□□ -0.66
CLN3-222	ENST00000566083		A0A0G2JRQ6	117 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	CRYM-AS1	A6NIL9	109 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	CEBPZOS	A8MTT3	80 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	C11orf94	C9JXX5	98 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	GSTZ1	O43708	216 aa	Predicted RBP	10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	SELENOH	Q8IZQ5	122 aa	Known RBP	10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	DIRAS2	Q96HU8	199 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	BCL7B	Q9BQE9	202 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	MIXL1	Q9H2W2	232 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	HRH4	Q9H3N8	390 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	CACNG5	Q9UF02	275 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	PFDN2	Q9UHV9	154 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	SCP2D1	Q9UJQ7	156 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	TMEM56-RWDD3	S4R434	201 aa		10.91	□□□□□ -0.66
CLN3-222	ENST00000566083	CTDSP2	O14595	271 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	HNRNPC	P07910	306 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	IGLC1	P0CG04	106 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	OR10J1	P30954	320 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	NUP62	P37198	522 aa	Predicted RBP	10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	ATP5I	P56385	69 aa	Predicted RBP	10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	IL18	Q14116	193 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	TIGIT	Q495A1	244 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	TMEM268	Q5VZI3	342 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	PRSS54	Q6PEW0	395 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	RAB2B	Q8WUD1	216 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	SEPSECS	Q9HD40	501 aa	Known RBP	10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	RSL24D1	Q9UHA3	163 aa	Known RBP	10.9	□□□□□ -0.66
CLN3-222	ENST00000566083		U3KQ87	197 aa		10.9	□□□□□ -0.66
CLN3-222	ENST00000566083	SULT1A3	P0DMM9	295 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	SULT1A4	P0DMN0	295 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	MIF	P14174	115 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	RND2	P52198	227 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	NUTF2	P61970	127 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	SNRPD3	P62318	126 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	MLANA	Q16655	118 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	TRPT1	Q86TN4	253 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	OR4C16	Q8NGL9	310 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	C2CD4C	Q8TF44	421 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	DCANP1	Q8TF63	244 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	GPR146	Q96CH1	333 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	MRPL36	Q9P0J6	103 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	FBXL17	Q9UF56	701 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083		U3KQE9	123 aa		10.89	□□□□□ -0.67
CLN3-222	ENST00000566083	ANXA3	P12429	323 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	NPY1R	P25929	384 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	ALDH3B2	P48448	385 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	NANOS2	P60321	138 aa	Known RBP	10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	SRPX	P78539	464 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	DHRS2	Q13268	280 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	CLVS1	Q8IUQ0	354 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	OR51S1	Q8NGJ8	323 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	LHFPL5	Q8TAF8	219 aa		10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	CCDC59	Q9P031	241 aa	Known RBP	10.88	□□□□□ -0.67
CLN3-222	ENST00000566083	AGRN	O00468	2067 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083		A0A0B4J2A0	478 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	ZNF688	P0C7X2	276 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	RD3L	P0DJH9	198 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	CCR6	P51684	374 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	TMBIM6	P55061	237 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	NMS	Q5H8A3	153 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	FAAP20	Q6NZ36	180 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	C16orf54	Q6UWD8	224 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	FAM24B	Q8N5W8	94 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	C1QTNF4	Q9BXJ3	329 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	SHPK	Q9UHJ6	478 aa		10.87	□□□□□ -0.67
CLN3-222	ENST00000566083	ANKRD20A5P	A0PJZ0	165 aa		10.86	□□□□□ -0.67
CLN3-222	ENST00000566083	TOMM40	O96008	361 aa		10.86	□□□□□ -0.67
CLN3-222	ENST00000566083	IFNA10	P01566	189 aa		10.86	□□□□□ -0.67
CLN3-222	ENST00000566083	IL4	P05112	153 aa		10.86	□□□□□ -0.67
CLN3-222	ENST00000566083	SPCS2	Q15005	226 aa		10.86	□□□□□ -0.67
CLN3-222	ENST00000566083	GLMP	Q8WWB7	406 aa		10.86	□□□□□ -0.67
CLN3-222	ENST00000566083	ZNF705E	A8MWA4	302 aa	Predicted RBP	10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	NOL3	O60936	208 aa	Known RBP	10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	FABP1	P07148	127 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	FAU	P35544	74 aa	Known RBP	10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	SMCO1	Q147U7	214 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	ACTL10	Q5JWF8	245 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083		Q8NAQ8	132 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	NPIPB3	Q92617	1050 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	NRN1	Q9NPD7	142 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	HSPB7	Q9UBY9	170 aa		10.85	□□□□□ -0.67
CLN3-222	ENST00000566083	BUB3	O43684	328 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	KLF9	Q13886	244 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	PSMG4	Q5JS54	123 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	LGI3	Q8N145	548 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	OR51G1	Q8NGK1	321 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	DYNC2LI1	Q8TCX1	351 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	DTD1	Q8TEA8	209 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	ACY3	Q96HD9	319 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	RAB40C	Q96S21	281 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	MCUB	Q9NWR8	336 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	TBC1D24	Q9ULP9	559 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	DUXB	A0A1W2PPF3	345 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	KNCN	A6PVL3	124 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	DEFB4A	O15263	64 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	GIG44	P09565	113 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	GPX4	P36969	197 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	AP3S2	P59780	193 aa		10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms