RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 HYDINQ4G0P3 5121 aa16.54■□□□□ 0.24
CLN3-215ENST00000565236 NXPH3O95157 252 aa16.54■□□□□ 0.24
CLN3-215ENST00000565236 SLC25A4P12235 298 aa16.54■□□□□ 0.24
CLN3-215ENST00000565236 CRYBB3P26998 211 aa16.54■□□□□ 0.24
CLN3-215ENST00000565236 NOXA1Q86UR1 476 aa16.54■□□□□ 0.24
CLN3-215ENST00000565236 PRR13Q9NZ81 148 aa16.54■□□□□ 0.24
CLN3-215ENST00000565236 RND2P52198 227 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 DEFB131AP59861 70 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 ETFRF1Q6IPR1 90 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 PRSS54Q6PEW0 395 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 OR1S2Q8NGQ3 325 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 Q8WTZ3 238 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 GATAD1Q8WUU5 269 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 GRAMD2BQ96HH9 432 aa16.53■□□□□ 0.24
CLN3-215ENST00000565236 ATF4P18848 351 aaPredicted RBP16.52■□□□□ 0.24
CLN3-215ENST00000565236 P2RY1P47900 373 aa16.52■□□□□ 0.24
CLN3-215ENST00000565236 NMSQ5H8A3 153 aa16.52■□□□□ 0.24
CLN3-215ENST00000565236 LEMD1Q68G75 181 aa16.52■□□□□ 0.24
CLN3-215ENST00000565236 STXBP6Q8NFX7 210 aa16.52■□□□□ 0.24
CLN3-215ENST00000565236 RARRES2Q99969 163 aa16.52■□□□□ 0.24
CLN3-215ENST00000565236 A0A0B4J2A0 478 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 NUPR2A6NF83 97 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 IGLC1P0CG04 106 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 ANXA3P12429 323 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 NPY1RP25929 384 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 OR10J1P30954 320 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 FAUP35544 74 aaKnown RBP16.51■□□□□ 0.23
CLN3-215ENST00000565236 CCR6P51684 374 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 LYZL2Q7Z4W2 148 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 FAM24BQ8N5W8 94 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 SHPKQ9UHJ6 478 aa16.51■□□□□ 0.23
CLN3-215ENST00000565236 IFNA10P01566 189 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 YPEL3P61236 119 aaPredicted RBP16.5■□□□□ 0.23
CLN3-215ENST00000565236 SUPT4H1P63272 117 aaKnown RBP16.5■□□□□ 0.23
CLN3-215ENST00000565236 SRPXP78539 464 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 SMCO1Q147U7 214 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 PYDC2Q56P42 97 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 LGI3Q8N145 548 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 TMEM170AQ8WVE7 144 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 U3KQ87 197 aa16.5■□□□□ 0.23
CLN3-215ENST00000565236 CA1P00915 261 aaPredicted RBP16.49■□□□□ 0.23
CLN3-215ENST00000565236 EIF2B2P49770 351 aaKnown RBP16.49■□□□□ 0.23
CLN3-215ENST00000565236 AP3S2P59780 193 aa16.49■□□□□ 0.23
CLN3-215ENST00000565236 RBMS2Q15434 407 aaKnown RBP16.49■□□□□ 0.23
CLN3-215ENST00000565236 CEMP1Q6PRD7 247 aaPredicted RBP16.49■□□□□ 0.23
CLN3-215ENST00000565236 STHQ8IWL8 128 aa16.49■□□□□ 0.23
CLN3-215ENST00000565236 NPIPB3Q92617 1050 aa16.49■□□□□ 0.23
CLN3-215ENST00000565236 ACY3Q96HD9 319 aa16.49■□□□□ 0.23
CLN3-215ENST00000565236 HSPB7Q9UBY9 170 aa16.49■□□□□ 0.23
CLN3-215ENST00000565236 ALMS1Q8TCU4 4167 aa16.48■□□□□ 0.23
CLN3-215ENST00000565236 CCDC160A6NGH7 325 aa16.48■□□□□ 0.23
CLN3-215ENST00000565236 K7EQG2 157 aa16.48■□□□□ 0.23
CLN3-215ENST00000565236 OR11H2Q8NH07 326 aa16.48■□□□□ 0.23
CLN3-215ENST00000565236 DTD1Q8TEA8 209 aa16.48■□□□□ 0.23
CLN3-215ENST00000565236 RBKSQ9H477 322 aa16.48■□□□□ 0.23
CLN3-215ENST00000565236 PIGBOS1A0A0B4J2F0 54 aa16.47■□□□□ 0.23
CLN3-215ENST00000565236 HELTA6NFD8 242 aa16.47■□□□□ 0.23
CLN3-215ENST00000565236 HNRNPCP07910 306 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLN3-215ENST00000565236 KLF9Q13886 244 aaPredicted RBP16.47■□□□□ 0.23
CLN3-215ENST00000565236 TMED4Q7Z7H5 227 aa16.47■□□□□ 0.23
CLN3-215ENST00000565236 TOMM5Q8N4H5 51 aa16.47■□□□□ 0.23
CLN3-215ENST00000565236 OR1S1Q8NH92 325 aa16.47■□□□□ 0.23
CLN3-215ENST00000565236 KLK5Q9Y337 293 aaPredicted RBP16.47■□□□□ 0.23
CLN3-215ENST00000565236 U3KQE9 123 aa16.47■□□□□ 0.23
CLN3-215ENST00000565236 EPPK1P58107 5090 aaKnown RBP16.46■□□□□ 0.23
CLN3-215ENST00000565236 IL4P05112 153 aa16.46■□□□□ 0.23
CLN3-215ENST00000565236 ZNF688P0C7X2 276 aa16.46■□□□□ 0.23
CLN3-215ENST00000565236 RD3LP0DJH9 198 aa16.46■□□□□ 0.23
CLN3-215ENST00000565236 S100A5P33763 92 aa16.46■□□□□ 0.23
CLN3-215ENST00000565236 AP2S1P53680 142 aaPredicted RBP16.46■□□□□ 0.23
CLN3-215ENST00000565236 IFNA4P05014 189 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 DHRS2Q13268 280 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 TMEM128Q5BJH2 165 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 C16orf54Q6UWD8 224 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 DCANP1Q8TF63 244 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 LINC00476Q8WZB0 136 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 TRIM63Q969Q1 353 aa16.45■□□□□ 0.22
CLN3-215ENST00000565236 TOMM40O96008 361 aa16.44■□□□□ 0.22
CLN3-215ENST00000565236 ATP5IP56385 69 aaPredicted RBP16.44■□□□□ 0.22
CLN3-215ENST00000565236 USF2Q15853 346 aaPredicted RBP16.44■□□□□ 0.22
CLN3-215ENST00000565236 V9GYH0 126 aa16.44■□□□□ 0.22
CLN3-215ENST00000565236 AGRNO00468 2067 aa16.44■□□□□ 0.22
CLN3-215ENST00000565236 LY6G6CO95867 125 aa16.43■□□□□ 0.22
CLN3-215ENST00000565236 PHLDA1Q8WV24 401 aaPredicted RBP16.43■□□□□ 0.22
CLN3-215ENST00000565236 GLMPQ8WWB7 406 aa16.43■□□□□ 0.22
CLN3-215ENST00000565236 SLC25A21Q9BQT8 299 aaPredicted RBP16.43■□□□□ 0.22
CLN3-215ENST00000565236 DUXBA0A1W2PPF3 345 aa16.42■□□□□ 0.22
CLN3-215ENST00000565236 KNCNA6PVL3 124 aa16.42■□□□□ 0.22
CLN3-215ENST00000565236 PSG1P11464 419 aa16.42■□□□□ 0.22
CLN3-215ENST00000565236 VAMP1P23763 118 aa16.42■□□□□ 0.22
CLN3-215ENST00000565236 TRPT1Q86TN4 253 aaKnown RBP16.42■□□□□ 0.22
CLN3-215ENST00000565236 C11orf45Q8TAV5 145 aa16.42■□□□□ 0.22
CLN3-215ENST00000565236 C11orf68Q9H3H3 251 aaKnown RBP16.42■□□□□ 0.22
CLN3-215ENST00000565236 GPX4P36969 197 aaPredicted RBP16.41■□□□□ 0.22
CLN3-215ENST00000565236 ZNF79Q15937 498 aa16.41■□□□□ 0.22
CLN3-215ENST00000565236 TMEM41BQ5BJD5 291 aa16.41■□□□□ 0.22
CLN3-215ENST00000565236 ACTL10Q5JWF8 245 aa16.41■□□□□ 0.22
CLN3-215ENST00000565236 MORN3Q6PF18 240 aaPredicted RBP16.41■□□□□ 0.22
CLN3-215ENST00000565236 OR51G1Q8NGK1 321 aa16.41■□□□□ 0.22
CLN3-215ENST00000565236 DEDD2Q8WXF8 326 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms