RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CDKN1BP46527 198 aa10.71□□□□□ -0.7
CLN3-210ENST00000563874 HNRNPA3P51991 378 aaKnown RBP10.71□□□□□ -0.7
CLN3-210ENST00000563874 SPACA3Q8IXA5 215 aa10.71□□□□□ -0.7
CLN3-210ENST00000563874 ZCCHC24Q8N2G6 241 aaKnown RBP10.71□□□□□ -0.7
CLN3-210ENST00000563874 NPIPB3Q92617 1050 aa10.71□□□□□ -0.7
CLN3-210ENST00000563874 UQCR10Q9UDW1 63 aa10.71□□□□□ -0.7
CLN3-210ENST00000563874 RPUSD1Q9UJJ7 312 aaKnown RBP10.71□□□□□ -0.7
CLN3-210ENST00000563874 TRAV17A0A0B4J275 112 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 SIAH2O43255 324 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 COX7A2P2O60397 106 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 CCL3L1P16619 93 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 GAGE1Q13065 139 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 NUP35Q8NFH5 326 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 FNDC4Q9H6D8 234 aaPredicted RBP10.7□□□□□ -0.7
CLN3-210ENST00000563874 DMXL1Q9Y485 3027 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 TANC2Q9HCD6 1990 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 PSMB11A5LHX3 300 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 IGHV1-46P01743 117 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 REG1AP05451 166 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 CCL8P80075 99 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 DIAPH2-AS1Q14236 149 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 OR1L8Q8NGR8 309 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 OR5B3Q8NH48 314 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 NUDT11Q96G61 164 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 PAXXQ9BUH6 204 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 RAB9BQ9NP90 201 aa10.7□□□□□ -0.7
CLN3-210ENST00000563874 TPRP12270 2363 aaKnown RBP10.7□□□□□ -0.7
CLN3-210ENST00000563874 HSBP1O75506 76 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 CD24P25063 80 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 Q56UQ5 140 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 PLA2G2CQ5R387 149 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 RNASEKQ6P5S7 137 aaKnown RBP10.69□□□□□ -0.7
CLN3-210ENST00000563874 PATE2Q6UY27 113 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 MRPL36Q9P0J6 103 aaKnown RBP10.69□□□□□ -0.7
CLN3-210ENST00000563874 LAMTOR2Q9Y2Q5 125 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 RAI1Q7Z5J4 1906 aaPredicted RBP10.69□□□□□ -0.7
CLN3-210ENST00000563874 WT1-ASQ06250 92 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 COX19Q49B96 90 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 C10orf113Q5VZT2 155 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 FAM222BQ8WU58 562 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 BLNKQ8WV28 456 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 C19orf24Q9BVV8 132 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 BET1LQ9NYM9 111 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 CEACAM8P31997 349 aaPredicted RBP10.69□□□□□ -0.7
CLN3-210ENST00000563874 HINT1P49773 126 aaPredicted RBP10.69□□□□□ -0.7
CLN3-210ENST00000563874 ZNF329Q86UD4 541 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 NDUFA4L2Q9NRX3 87 aa10.69□□□□□ -0.7
CLN3-210ENST00000563874 PCNX1Q96RV3 2341 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 HIGD1CA8MV81 97 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 H3BTX0 84 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 M0R2Z0 102 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 PEX7O00628 323 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 NDUFB8O95169 186 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 APELAP0DMC3 54 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 ERHP84090 104 aaKnown RBP10.68□□□□□ -0.7
CLN3-210ENST00000563874 DEFB109BQ30KR1 87 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 ZNF788Q6ZQV5 615 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 ZFP30Q9Y2G7 519 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 KALRNO60229 2985 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 VWC2LB2RUY7 222 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 SELENOVP59797 346 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 PMCHL1Q16048 86 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 TBR1Q16650 682 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 EBLN2Q6P2I7 272 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 ZNF841Q6ZN19 808 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 KIR3DL3Q8N743 410 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 MRPL32Q9BYC8 188 aaKnown RBP10.68□□□□□ -0.7
CLN3-210ENST00000563874 GSX1Q9H4S2 264 aaPredicted RBP10.68□□□□□ -0.7
CLN3-210ENST00000563874 TP73-AS1Q9UF72 201 aa10.68□□□□□ -0.7
CLN3-210ENST00000563874 IGLV3-9A0A075B6K5 115 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 SH2D7A6NKC9 451 aaPredicted RBP10.67□□□□□ -0.7
CLN3-210ENST00000563874 M0QZ24 198 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 MOSP00540 346 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 ORM2P19652 201 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 TIMM23BQ5SRD1 257 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 RUSC1-AS1Q66K80 236 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 PNKDQ8N490 385 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 OR2D3Q8NGH3 330 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 H0YJW9 148 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 APOA2P02652 100 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 C19orf35Q6ZS72 473 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 MBD6Q96DN6 1003 aa10.67□□□□□ -0.7
CLN3-210ENST00000563874 IGHV3-21A0A0B4J1V1 117 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 FAM181BA6NEQ2 426 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 GATA4P43694 442 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 FAM27E3Q08E93 113 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 TCF24Q7RTU0 167 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 LINC00305Q7Z4B0 112 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 FLYWCH2Q96CP2 140 aaKnown RBP10.66□□□□□ -0.7
CLN3-210ENST00000563874 DYSFO75923 2080 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 hADV38S2A0JD32 116 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 CGB1A6NKQ9 187 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 FOXA3P55318 350 aaPredicted RBP10.66□□□□□ -0.7
CLN3-210ENST00000563874 RBMXL3Q8N7X1 1067 aaKnown RBP10.66□□□□□ -0.7
CLN3-210ENST00000563874 CACNG8Q8WXS5 425 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 TNFRSF19Q9NS68 423 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 IGKV1D-37A0A075B6S9 117 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 TSPOP30536 169 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 FAM169BQ8N8A8 192 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 OSR1Q8TAX0 266 aaPredicted RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms