RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 HEYLQ9NQ87 328 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 CACNG5Q9UF02 275 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 ANKRD20A5PA0PJZ0 165 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 CA1P00915 261 aaPredicted RBP12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TMBIM6P55061 237 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TMEM187Q14656 261 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TIGITQ495A1 244 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TMEM41BQ5BJD5 291 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 NMSQ5H8A3 153 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TMEM268Q5VZI3 342 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 LEMD1Q68G75 181 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TRPT1Q86TN4 253 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 SLC24A4Q8NFF2 622 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 TMEM170AQ8WVE7 144 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 NARS2Q96I59 477 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 RABAC1Q9UI14 185 aa12.57□□□□□ -0.4
VPS9D1-203ENST00000563798 GIG44P09565 113 aaPredicted RBP12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 IL18Q14116 193 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 MORN3Q6PF18 240 aaPredicted RBP12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 NOXA1Q86UR1 476 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 STHQ8IWL8 128 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 OR51S1Q8NGJ8 323 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 C11orf45Q8TAV5 145 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 Q8WTZ3 238 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 SOSTQ9BQB4 213 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 KRTAP17-1Q9BYP8 105 aa12.56□□□□□ -0.4
VPS9D1-203ENST00000563798 HELTA6NFD8 242 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 CEBPZOSA8MTT3 80 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 RND2P52198 227 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 RBMS2Q15434 407 aaKnown RBP12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 LGALS9CQ6DKI2 356 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 ETFRF1Q6IPR1 90 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 C16orf54Q6UWD8 224 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 CLVS1Q8IUQ0 354 aaPredicted RBP12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 SCGB3A2Q96PL1 93 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 RSL24D1Q9UHA3 163 aaKnown RBP12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 KCNIP3Q9Y2W7 256 aa12.55□□□□□ -0.4
VPS9D1-203ENST00000563798 HNRNPCP07910 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 SULT1A3P0DMM9 295 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 SULT1A4P0DMN0 295 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 SPP1P10451 314 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 OR10J1P30954 320 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 EIF2B2P49770 351 aaKnown RBP12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 AP2S1P53680 142 aaPredicted RBP12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 STXBP6Q8NFX7 210 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 GLMPQ8WWB7 406 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 HRH4Q9H3N8 390 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 SEPSECSQ9HD40 501 aaKnown RBP12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 SCP2D1Q9UJQ7 156 aa12.54□□□□□ -0.4
VPS9D1-203ENST00000563798 A0A0B4J2A0 478 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 NPY1RP25929 384 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 CCR6P51684 374 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 TCTAP57738 103 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 NANOS2P60321 138 aaKnown RBP12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 Q8NAQ8 132 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 SLIRPQ9GZT3 109 aaKnown RBP12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 HSPB7Q9UBY9 170 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 SHPKQ9UHJ6 478 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 U3KQ87 197 aa12.53□□□□□ -0.4
VPS9D1-203ENST00000563798 ZNF705EA8MWA4 302 aaPredicted RBP12.52□□□□□ -0.41
VPS9D1-203ENST00000563798 NXPH3O95157 252 aa12.52□□□□□ -0.41
VPS9D1-203ENST00000563798 ATP5IP56385 69 aaPredicted RBP12.52□□□□□ -0.41
VPS9D1-203ENST00000563798 SUPT4H1P63272 117 aaKnown RBP12.52□□□□□ -0.41
VPS9D1-203ENST00000563798 USF2Q15853 346 aaPredicted RBP12.52□□□□□ -0.41
VPS9D1-203ENST00000563798 NPIPB3Q92617 1050 aa12.52□□□□□ -0.41
VPS9D1-203ENST00000563798 BUB3O43684 328 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 TOMM40O96008 361 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 IFNA4P05014 189 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 ZNF688P0C7X2 276 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 TNFSF8P32971 234 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 SMCO1Q147U7 214 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 CSNK1G2-AS1Q8NCQ2 148 aa12.51□□□□□ -0.41
VPS9D1-203ENST00000563798 PIGBOS1A0A0B4J2F0 54 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 KNCNA6PVL3 124 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 IL4P05112 153 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 RD3LP0DJH9 198 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 MIFP14174 115 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 SRPXP78539 464 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 DHRS2Q13268 280 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 RAB40CQ96S21 281 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 KMT2AQ03164 3969 aa12.5□□□□□ -0.41
VPS9D1-203ENST00000563798 FABP12A6NFH5 140 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 C11orf94C9JXX5 98 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 H3BMQ9 156 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 DEFB4AO15263 64 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 IFNA10P01566 189 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 RBMY1A1P0DJD3 496 aaKnown RBP12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 RBMY1CP0DJD4 496 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 C4BPBP20851 252 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 RBMY1FQ15415 496 aaKnown RBP12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 ACTL10Q5JWF8 245 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 LYZL2Q7Z4W2 148 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 LGI3Q8N145 548 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 RPP25LQ8N5L8 163 aaKnown RBP12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 DTD1Q8TEA8 209 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 C2CD4CQ8TF44 421 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 NRN1Q9NPD7 142 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 PRR13Q9NZ81 148 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 FBXL17Q9UF56 701 aa12.49□□□□□ -0.41
VPS9D1-203ENST00000563798 X6R8D5 127 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms