RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TIGITQ495A1 244 aa12.47□□□□□ -0.41
CLK3-210ENST00000563112 OR1S2Q8NGQ3 325 aa12.47□□□□□ -0.41
CLK3-210ENST00000563112 Q8WTZ3 238 aa12.47□□□□□ -0.41
CLK3-210ENST00000563112 MAP6D1Q9H9H5 199 aa12.47□□□□□ -0.41
CLK3-210ENST00000563112 RYR2Q92736 4967 aa12.47□□□□□ -0.41
CLK3-210ENST00000563112 TRAV2A0A0B4J234 112 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 IFNA10P01566 189 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 RND2P52198 227 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 SUPT4H1P63272 117 aaKnown RBP12.46□□□□□ -0.41
CLK3-210ENST00000563112 TNFRSF9Q07011 255 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 NMSQ5H8A3 153 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 PRSS54Q6PEW0 395 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 LYZL2Q7Z4W2 148 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 TMED4Q7Z7H5 227 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 DEDD2Q8WXF8 326 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 RNF183Q96D59 192 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 GRAMD2BQ96HH9 432 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 MS4A6AQ9H2W1 248 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 U3KQ87 197 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 V9GYH0 126 aa12.46□□□□□ -0.41
CLK3-210ENST00000563112 JTBO76095 146 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 IGKV1-17P01599 117 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 CRYBB3P26998 211 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 OR10J1P30954 320 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 TMEM128Q5BJH2 165 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 LILRB2Q8N423 598 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 OR1S1Q8NH92 325 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 TRIM63Q969Q1 353 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 SLC25A21Q9BQT8 299 aaPredicted RBP12.45□□□□□ -0.42
CLK3-210ENST00000563112 CSTL1Q9H114 145 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 HSPB7Q9UBY9 170 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 RABAC1Q9UI14 185 aa12.45□□□□□ -0.42
CLK3-210ENST00000563112 DUXBA0A1W2PPF3 345 aa12.44□□□□□ -0.42
CLK3-210ENST00000563112 MPTX1A8MV57 137 aa12.44□□□□□ -0.42
CLK3-210ENST00000563112 ZNF701M0R085 212 aaPredicted RBP12.44□□□□□ -0.42
CLK3-210ENST00000563112 IGLC1P0CG04 106 aa12.44□□□□□ -0.42
CLK3-210ENST00000563112 EIF2B2P49770 351 aaKnown RBP12.44□□□□□ -0.42
CLK3-210ENST00000563112 ATP5IP56385 69 aaPredicted RBP12.44□□□□□ -0.42
CLK3-210ENST00000563112 YPEL3P61236 119 aaPredicted RBP12.44□□□□□ -0.42
CLK3-210ENST00000563112 SPANXN2Q5MJ10 180 aa12.44□□□□□ -0.42
CLK3-210ENST00000563112 DTD1Q8TEA8 209 aa12.44□□□□□ -0.42
CLK3-210ENST00000563112 RBKSQ9H477 322 aa12.44□□□□□ -0.42
CLK3-210ENST00000563112 LYSTQ99698 3801 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 SACSQ9NZJ4 4579 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 VAMP1P23763 118 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 P2RY1P47900 373 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 ZNF124Q15973 351 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 LYG2Q86SG7 212 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 CCDC190Q86UF4 302 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 STXBP6Q8NFX7 210 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 NPIPB3Q92617 1050 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 ACY3Q96HD9 319 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 PTTG2Q9NZH5 202 aa12.43□□□□□ -0.42
CLK3-210ENST00000563112 A0A0J9YWU9 116 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 IFNA4P05014 189 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 HNRNPCP07910 306 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLK3-210ENST00000563112 INPP1P49441 399 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 DEFB131AP59861 70 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 ZNF79Q15937 498 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 TMEM217Q8N7C4 229 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 TMEM170AQ8WVE7 144 aa12.42□□□□□ -0.42
CLK3-210ENST00000563112 HELTA6NFD8 242 aa12.41□□□□□ -0.42
CLK3-210ENST00000563112 RD3LP0DJH9 198 aa12.41□□□□□ -0.42
CLK3-210ENST00000563112 AP2S1P53680 142 aaPredicted RBP12.41□□□□□ -0.42
CLK3-210ENST00000563112 RBMS2Q15434 407 aaKnown RBP12.41□□□□□ -0.42
CLK3-210ENST00000563112 GATAD1Q8WUU5 269 aa12.41□□□□□ -0.42
CLK3-210ENST00000563112 RBM38Q9H0Z9 239 aaKnown RBP12.41□□□□□ -0.42
CLK3-210ENST00000563112 CXorf65A6NEN9 183 aa12.4□□□□□ -0.42
CLK3-210ENST00000563112 IL4P05112 153 aa12.4□□□□□ -0.42
CLK3-210ENST00000563112 CNPY1Q3B7I2 92 aa12.4□□□□□ -0.42
CLK3-210ENST00000563112 LEMD1Q68G75 181 aa12.4□□□□□ -0.42
CLK3-210ENST00000563112 CENPSQ8N2Z9 138 aa12.4□□□□□ -0.42
CLK3-210ENST00000563112 LRTM2Q8N967 370 aa12.4□□□□□ -0.42
CLK3-210ENST00000563112 K7EQG2 157 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 MED6O75586 246 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 SFT2D2O95562 160 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 TOMM40O96008 361 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 SLC25A6P12236 298 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 ATF4P18848 351 aaPredicted RBP12.39□□□□□ -0.43
CLK3-210ENST00000563112 GPX4P36969 197 aaPredicted RBP12.39□□□□□ -0.43
CLK3-210ENST00000563112 RAB11AP62491 216 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 PMS2P11Q13670 270 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 STHQ8IWL8 128 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 FAM24BQ8N5W8 94 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 SLC35E1Q96K37 410 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 RARRES2Q99969 163 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 PFDN2Q9UHV9 154 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 TMED3Q9Y3Q3 217 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 U3KQE9 123 aa12.39□□□□□ -0.43
CLK3-210ENST00000563112 PLECQ15149 4684 aaKnown RBP12.38□□□□□ -0.43
CLK3-210ENST00000563112 NAP1L6A6NFF2 107 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 FAM90A26D6RGX4 464 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 PITX3O75364 302 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 CA1P00915 261 aaPredicted RBP12.38□□□□□ -0.43
CLK3-210ENST00000563112 FABP1P07148 127 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 DHRS2Q13268 280 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 PPP1R1AQ13522 171 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 TRIQKQ629K1 86 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 C16orf54Q6UWD8 224 aa12.38□□□□□ -0.43
CLK3-210ENST00000563112 SRRQ9GZT4 340 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms