RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CTXND1A0A1B0GTU2 59 aa16.7■□□□□ 0.26
CLN3-209ENST00000561689 TCRBV4S1A1TA0A5B7 111 aa16.7■□□□□ 0.26
CLN3-209ENST00000561689 M0QZK8 103 aa16.7■□□□□ 0.26
CLN3-209ENST00000561689 CDC34P49427 236 aaPredicted RBP16.7■□□□□ 0.26
CLN3-209ENST00000561689 KRTAP1-1Q07627 177 aa16.7■□□□□ 0.26
CLN3-209ENST00000561689 A0A1W2PPV4 95 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 BTBD17A6NE02 478 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 OR2J3O76001 311 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 GUK1Q16774 197 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 Q6YL49 198 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 Q6ZS46 218 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 FAM110DQ8TAY7 271 aaPredicted RBP16.69■□□□□ 0.26
CLN3-209ENST00000561689 SCRT1Q9BWW7 348 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 EIF5A2Q9GZV4 153 aaKnown RBP16.69■□□□□ 0.26
CLN3-209ENST00000561689 LOC105371267A0A1B0GV96 52 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 NDUFB8O95169 186 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 SFTA3P0C7M3 94 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 AKIRIN2Q53H80 203 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 C16orf82Q7Z2V1 217 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 SVBPQ8N300 66 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 OR4X1Q8NH49 305 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 SEC11CQ9BY50 192 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 ZNF355PQ9NSJ1 428 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 ACANP16112 2415 aa16.69■□□□□ 0.26
CLN3-209ENST00000561689 SEC14L6B5MCN3 397 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 RARRES2Q99969 163 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 SEPSECSQ9HD40 501 aaKnown RBP16.68■□□□□ 0.26
CLN3-209ENST00000561689 HAGHQ16775 308 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 SPATA31B1PQ5VZV4 182 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 OR5R1Q8NH85 324 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 THYN1Q9P016 225 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 GNG13Q9P2W3 67 aa16.68■□□□□ 0.26
CLN3-209ENST00000561689 MYO9AB2RTY4 2548 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 TRAV41A0A0B4J266 112 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 CD5LO43866 347 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 TSPAN9O75954 239 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 SLC35E3Q7Z769 313 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 TMEM68Q96MH6 324 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 TRGV9Q99603 122 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 TMPRSS5Q9H3S3 457 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 FBXL7Q9UJT9 491 aa16.67■□□□□ 0.26
CLN3-209ENST00000561689 HOXA3O43365 443 aaPredicted RBP16.66■□□□□ 0.26
CLN3-209ENST00000561689 IGHG2P01859 326 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 IGLC1P0CG04 106 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 NPBWR1P48145 328 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 PBDC1Q9BVG4 233 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 YAE1D1Q9NRH1 226 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 SONP18583 2426 aaKnown RBP16.66■□□□□ 0.26
CLN3-209ENST00000561689 RBFOX3A6NFN3 312 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 CLN5O75503 358 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 IGHV3-23P01764 117 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 IQCF2Q8IXL9 164 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 NOL4LQ96MY1 436 aaPredicted RBP16.66■□□□□ 0.26
CLN3-209ENST00000561689 DOK5Q9P104 306 aa16.66■□□□□ 0.26
CLN3-209ENST00000561689 SELENOTP62341 195 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 RHOBP62745 196 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 TIGITQ495A1 244 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 FAM78BQ5VT40 261 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 TMEM37Q8WXS4 190 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 MS4A10Q96PG2 267 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 VPREB3Q9UKI3 123 aa16.65■□□□□ 0.26
CLN3-209ENST00000561689 IGF1P05019 195 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 SRP14P37108 136 aaKnown RBP16.64■□□□□ 0.25
CLN3-209ENST00000561689 PEA15Q15121 130 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 C19orf54Q5BKX5 351 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 TMEM88Q6PEY1 159 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 HIST1H1BP16401 226 aaKnown RBP16.64■□□□□ 0.25
CLN3-209ENST00000561689 PPT1P50897 306 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 CRIP2P52943 208 aaPredicted RBP16.64■□□□□ 0.25
CLN3-209ENST00000561689 RHOGP84095 191 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 MIR17HGQ75NE6 70 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 PRDM13Q9H4Q3 707 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 C21orf62Q9NYP8 219 aa16.64■□□□□ 0.25
CLN3-209ENST00000561689 IGKV1-17P01599 117 aa16.63■□□□□ 0.25
CLN3-209ENST00000561689 MFAP4P55083 255 aa16.63■□□□□ 0.25
CLN3-209ENST00000561689 C15orf32Q32M92 178 aa16.63■□□□□ 0.25
CLN3-209ENST00000561689 TEX29Q8N6K0 151 aa16.63■□□□□ 0.25
CLN3-209ENST00000561689 SIGLECL1Q8N7X8 197 aa16.63■□□□□ 0.25
CLN3-209ENST00000561689 DUX5Q96PT3 197 aa16.63■□□□□ 0.25
CLN3-209ENST00000561689 PSMB11A5LHX3 300 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 F8W735 103 aaPredicted RBP16.62■□□□□ 0.25
CLN3-209ENST00000561689 ATF4P18848 351 aaPredicted RBP16.62■□□□□ 0.25
CLN3-209ENST00000561689 Q56UQ5 140 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 CBLN2Q8IUK8 224 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 DNAJC4Q9NNZ3 241 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 FUT9Q9Y231 359 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 OTOGQ6ZRI0 2925 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 TRBV9A0A0B4J1U6 114 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 GNG7O60262 68 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 COX7A2P2O60397 106 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 STAG3L2P0CL84 134 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 STAG3L3P0CL85 134 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 ARL14EPLP0DKL9 152 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 ORM2P19652 201 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 PATE2Q6UY27 113 aa16.62■□□□□ 0.25
CLN3-209ENST00000561689 PSG1P11464 419 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 ICAM4Q14773 271 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 KLK9Q2XQG4 91 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 OR1B1Q8NGR6 318 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 RXFP4Q8TDU9 374 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms