RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ARL16Q0P5N6 197 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 OR5I1Q13606 314 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF880Q6PDB4 577 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 LINC00305Q7Z4B0 112 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 HAPLN4Q86UW8 402 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF439Q8NDP4 499 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 OR5AN1Q8NGI8 311 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 MARC2Q969Z3 335 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 JMJD8Q96S16 334 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 TBL2Q9Y4P3 447 aaKnown RBP4.35□□□□□ -1.71
VPS13C-209ENST00000560637 RNF222A6NCQ9 220 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 E7EUB6 86 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 F6UZH7 168 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 SAP30O75446 220 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 PYYP10082 97 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 TCL1AP56279 114 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 ID3Q02535 119 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 SRSF7Q16629 238 aaKnown RBP eCLIP4.34□□□□□ -1.71
VPS13C-209ENST00000560637 C10orf99Q6UWK7 81 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 PAXXQ9BUH6 204 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 VSIRQ9H7M9 311 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 HMSDA8MTL9 139 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 RBFOX2O43251 390 aaKnown RBP eCLIP4.34□□□□□ -1.71
VPS13C-209ENST00000560637 TCF21O43680 179 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 CT45A10P0DMU9 189 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 GUK1Q16774 197 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 ATP6V1FQ16864 119 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 TMEM88Q6PEY1 159 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF833PQ6ZTB9 187 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 KLHDC1Q8N7A1 406 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 TMEM167AQ8TBQ9 72 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 C1orf159Q96HA4 380 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 SMIM8Q96KF7 97 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 SIRPDQ9H106 197 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 BET1LQ9NYM9 111 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 CACFD1Q9UGQ2 172 aa4.34□□□□□ -1.71
VPS13C-209ENST00000560637 TRAV34A0A0B4J273 112 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 PGPA6NDG6 321 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 UMAD1C9J7I0 102 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 BMPR1BO00238 502 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 IGLV1-47P01700 117 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 MBP02144 154 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 S100A4P26447 101 aaKnown RBP4.34□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM177Q53S58 311 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 MIR17HGQ75NE6 70 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF738Q8NE65 137 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 NIPSNAP3BQ9BS92 247 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 TECRQ9NZ01 308 aaKnown RBP4.34□□□□□ -1.72
VPS13C-209ENST00000560637 SLC45A2Q9UMX9 530 aa4.34□□□□□ -1.72
VPS13C-209ENST00000560637 MUC21A0A0G2JKD1 596 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 A0A0G2JLM5 398 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 MUC21A0A140T8X8 626 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 C11orf94C9JXX5 98 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 K7EQM0 130 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 M0QZK8 103 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 CORTO00230 105 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 PITX3O75364 302 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 ARL14EPLP0DKL9 152 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 CFPP27918 469 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 COMPP49747 757 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-209ENST00000560637 EMP1P54849 157 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 MUC21Q5SSG8 566 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 SPATA31B1PQ5VZV4 182 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF562Q6V9R5 426 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 C12orf54Q6X4T0 127 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 OR4D5Q8NGN0 318 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 NPCDR1Q9BY65 106 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 KLK15Q9H2R5 256 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 WFDC1Q9HC57 220 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 DNAJC4Q9NNZ3 241 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 HSPB7Q9UBY9 170 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 RAI1Q7Z5J4 1906 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-209ENST00000560637 FAM90A26D6RGX4 464 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 PSG1P11464 419 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 TAGLN2P37802 199 aaKnown RBP4.33□□□□□ -1.72
VPS13C-209ENST00000560637 PAFAH1B2P68402 229 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 CD69Q07108 199 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 LOXL1Q08397 574 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-209ENST00000560637 BTN1A1Q13410 526 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 TEX38Q6PEX7 206 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 Q6ZS46 218 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 Q6ZS49 121 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 CYP2G1PQ6ZSU1 146 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 PRNTQ86SH4 94 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 WDR61Q9GZS3 305 aaKnown RBP4.33□□□□□ -1.72
VPS13C-209ENST00000560637 VPREB3Q9UKI3 123 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 S100A6P06703 90 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 MFAP2P55001 183 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 DLX6P56179 175 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 HIST1H1AQ02539 215 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-209ENST00000560637 ICAM4Q14773 271 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 DEFB121Q5J5C9 76 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 PRR31Q5SQ13 230 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 LDLRAD2Q5SZI1 272 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 C8orf86Q6ZUL3 223 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 RNF114Q9Y508 228 aa4.33□□□□□ -1.72
VPS13C-209ENST00000560637 C15orf62A8K5M9 175 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 FCN3O75636 299 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF688P0C7X2 276 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 S100A1P23297 94 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms