RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ZNF688P0C7X2 276 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 IGLC1P0CG04 106 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 AKR1C4P17516 323 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 ATF4P18848 351 aaPredicted RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 TNFSF8P32971 234 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 NANOS2P60321 138 aaKnown RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 TMEM187Q14656 261 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 C2orf83Q53S99 150 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 STHQ8IWL8 128 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 SLC24A4Q8NFF2 622 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 OR1S2Q8NGQ3 325 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 RNASEH2CQ8TDP1 164 aaKnown RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 Q8WTZ3 238 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 PHLDA1Q8WV24 401 aaPredicted RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 TMEM170AQ8WVE7 144 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 NPIPB3Q92617 1050 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 ACY3Q96HD9 319 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 NARS2Q96I59 477 aaKnown RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 FBXL17Q9UF56 701 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 RSL24D1Q9UHA3 163 aaKnown RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 SCP2D1Q9UJQ7 156 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 HYDINQ4G0P3 5121 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 IFNA10P01566 189 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 SULT1A3P0DMM9 295 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 SULT1A4P0DMN0 295 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 NPY1RP25929 384 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 OR10J1P30954 320 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 LYZL2Q7Z4W2 148 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 C11orf45Q8TAV5 145 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 GRAMD2BQ96HH9 432 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 SOSTQ9BQB4 213 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 SLIRPQ9GZT3 109 aaKnown RBP7.47□□□□□ -1.21
LDLR-214ENST00000560628 RABL2AQ9UBK7 228 aaPredicted RBP7.47□□□□□ -1.21
LDLR-214ENST00000560628 RABL2BQ9UNT1 228 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 U3KQE9 123 aa7.47□□□□□ -1.21
LDLR-214ENST00000560628 H3BMQ9 156 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 NOL3O60936 208 aaKnown RBP7.46□□□□□ -1.22
LDLR-214ENST00000560628 HNRNPCP07910 306 aaKnown RBP eCLIP7.46□□□□□ -1.22
LDLR-214ENST00000560628 GIG44P09565 113 aaPredicted RBP7.46□□□□□ -1.22
LDLR-214ENST00000560628 SLC25A4P12235 298 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 CCR6P51684 374 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 YPEL3P61236 119 aaPredicted RBP7.46□□□□□ -1.22
LDLR-214ENST00000560628 DHRS2Q13268 280 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 NMSQ5H8A3 153 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 ACTL10Q5JWF8 245 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 ETFRF1Q6IPR1 90 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 MCFD2Q8NI22 146 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 IL22RA2Q969J5 263 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 SCGB3A2Q96PL1 93 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 BCL7BQ9BQE9 202 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 RBKSQ9H477 322 aa7.46□□□□□ -1.22
LDLR-214ENST00000560628 AGRNO00468 2067 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 IL4P05112 153 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 RD3LP0DJH9 198 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 SUPT4H1P63272 117 aaKnown RBP7.45□□□□□ -1.22
LDLR-214ENST00000560628 SMCO1Q147U7 214 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 USF2Q15853 346 aaPredicted RBP7.45□□□□□ -1.22
LDLR-214ENST00000560628 PYDC2Q56P42 97 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 PSMG4Q5JS54 123 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 C16orf54Q6UWD8 224 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 TRPT1Q86TN4 253 aaKnown RBP7.45□□□□□ -1.22
LDLR-214ENST00000560628 NOXA1Q86UR1 476 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 LGI3Q8N145 548 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 DCANP1Q8TF63 244 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 GLMPQ8WWB7 406 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 RAB40CQ96S21 281 aa7.45□□□□□ -1.22
LDLR-214ENST00000560628 EPPK1P58107 5090 aaKnown RBP7.44□□□□□ -1.22
LDLR-214ENST00000560628 A0A0B4J2A0 478 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 HELTA6NFD8 242 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 IFNA4P05014 189 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 PSG1P11464 419 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 EIF2B2P49770 351 aaKnown RBP7.44□□□□□ -1.22
LDLR-214ENST00000560628 KLF9Q13886 244 aaPredicted RBP7.44□□□□□ -1.22
LDLR-214ENST00000560628 TMED4Q7Z7H5 227 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 RPP25LQ8N5L8 163 aaKnown RBP7.44□□□□□ -1.22
LDLR-214ENST00000560628 OR51G1Q8NGK1 321 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 OR1S1Q8NH92 325 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 DTD1Q8TEA8 209 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 MFFQ9GZY8 342 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 C11orf68Q9H3H3 251 aaKnown RBP7.44□□□□□ -1.22
LDLR-214ENST00000560628 CLEC5AQ9NY25 188 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 HSPB7Q9UBY9 170 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 CACFD1Q9UGQ2 172 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 SHPKQ9UHJ6 478 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 U3KQ87 197 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 ALMS1Q8TCU4 4167 aa7.44□□□□□ -1.22
LDLR-214ENST00000560628 IGHV4-28A0A0C4DH34 117 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 DEDDO75618 318 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 TOMM40O96008 361 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 RBMY1A1P0DJD3 496 aaKnown RBP7.43□□□□□ -1.22
LDLR-214ENST00000560628 RBMY1CP0DJD4 496 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 ANXA3P12429 323 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 C4BPBP20851 252 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 AP2S1P53680 142 aaPredicted RBP7.43□□□□□ -1.22
LDLR-214ENST00000560628 RBMY1FQ15415 496 aaKnown RBP7.43□□□□□ -1.22
LDLR-214ENST00000560628 MORN3Q6PF18 240 aaPredicted RBP7.43□□□□□ -1.22
LDLR-214ENST00000560628 GSG1LQ6UXU4 331 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 PBDC1Q9BVG4 233 aa7.43□□□□□ -1.22
LDLR-214ENST00000560628 PAIP2BQ9ULR5 123 aaKnown RBP7.43□□□□□ -1.22
LDLR-214ENST00000560628 CCDC160A6NGH7 325 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms