RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445		A0A0B4J2A0	478 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445		A0A0J9YWU9	116 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	DUXB	A0A1W2PPF3	345 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	YPEL3	P61236	119 aa	Predicted RBP	10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	APRG1	Q8IVJ8	170 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	STH	Q8IWL8	128 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	LGI3	Q8N145	548 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	TOMM5	Q8N4H5	51 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	GBGT1	Q8N5D6	347 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	SOST	Q9BQB4	213 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	SHPK	Q9UHJ6	478 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445		U3KQ87	197 aa		10.41	□□□□□ -0.74
TPM1-223	ENST00000560445	IGHV3OR16-13	A0A075B7E8	117 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	IGHV3-74	A0A0B4J1X5	117 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445		A0A0G2JRQ6	117 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	IFNA10	P01566	189 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	AKR1C4	P17516	323 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	CRYBB3	P26998	211 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	OR10J1	P30954	320 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	P2RY1	P47900	373 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	SMCO1	Q147U7	214 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	MORN3	Q6PF18	240 aa	Predicted RBP	10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	CENPS	Q8N2Z9	138 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	STXBP6	Q8NFX7	210 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445	ZNF414	Q96IQ9	312 aa		10.4	□□□□□ -0.74
TPM1-223	ENST00000560445		A0A1B0GU03	582 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	HNRNPC	P07910	306 aa	Known RBP eCLIP	10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	SPP1	P10451	314 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	RND2	P52198	227 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	TMEM187	Q14656	261 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	NMS	Q5H8A3	153 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445		Q6ZRM9	215 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	LHFPL5	Q8TAF8	219 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	GPR146	Q96CH1	333 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	RARRES2	Q99969	163 aa		10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	SLC25A21	Q9BQT8	299 aa	Predicted RBP	10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	C11orf68	Q9H3H3	251 aa	Known RBP	10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	FNDC4	Q9H6D8	234 aa	Predicted RBP	10.39	□□□□□ -0.75
TPM1-223	ENST00000560445	CSMD3	Q7Z407	3707 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	ZNF701	M0R085	212 aa	Predicted RBP	10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	CA1	P00915	261 aa	Predicted RBP	10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	IGKV1-17	P01599	117 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	IGLC1	P0CG04	106 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	INPP1	P49441	399 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	DEFB131A	P59861	70 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	SNRPD3	P62318	126 aa	Known RBP	10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	PMS2P11	Q13670	270 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	TIGIT	Q495A1	244 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	SPANXN2	Q5MJ10	180 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	PRSS54	Q6PEW0	395 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	CEMP1	Q6PRD7	247 aa	Predicted RBP	10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	OR1S1	Q8NH92	325 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	DTD1	Q8TEA8	209 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	SEPSECS	Q9HD40	501 aa	Known RBP	10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	PLA2G2E	Q9NZK7	142 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	HSPB7	Q9UBY9	170 aa		10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	DYNC2H1	Q8NCM8	4307 aa	Known RBP	10.38	□□□□□ -0.75
TPM1-223	ENST00000560445	IGHV3-66	A0A0C4DH42	116 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	MED6	O75586	246 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	IFNA4	P05014	189 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	RD3L	P0DJH9	198 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	S100A7	P31151	101 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	RPP30	P78346	268 aa	Known RBP	10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	TMEM128	Q5BJH2	165 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	ACY3	Q96HD9	319 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	SLC35E1	Q96K37	410 aa		10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	CIB3	Q96Q77	187 aa	Predicted RBP	10.37	□□□□□ -0.75
TPM1-223	ENST00000560445	STARD9	Q9P2P6	4700 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	FAM90A26	D6RGX4	464 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445		K7EQG2	157 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	TOMM40	O96008	361 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	APOH	P02749	345 aa	Predicted RBP	10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	NUTF2	P61970	127 aa	Known RBP	10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	RAB11A	P62491	216 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	KLF9	Q13886	244 aa	Predicted RBP	10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	SAMD13	Q5VXD3	122 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	TMED4	Q7Z7H5	227 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	OR11H2	Q8NH07	326 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	C1QTNF4	Q9BXJ3	329 aa		10.36	□□□□□ -0.75
TPM1-223	ENST00000560445	RYR2	Q92736	4967 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	CFD	P00746	253 aa	Predicted RBP	10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	IL4	P05112	153 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	SLC25A6	P12236	298 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	GPX4	P36969	197 aa	Predicted RBP	10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	TCTA	P57738	103 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	DHRS2	Q13268	280 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	OR8G2P	Q6IF36	304 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	OR51G1	Q8NGK1	321 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	C11orf45	Q8TAV5	145 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	LINC00476	Q8WZB0	136 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	NPIPB3	Q92617	1050 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	FBXL17	Q9UF56	701 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445		V9GYH0	126 aa		10.35	□□□□□ -0.75
TPM1-223	ENST00000560445	ZFP92	A6NM28	416 aa		10.34	□□□□□ -0.75
TPM1-223	ENST00000560445	VAMP1	P23763	118 aa		10.34	□□□□□ -0.75
TPM1-223	ENST00000560445	UBE2M	P61081	183 aa	Known RBP	10.34	□□□□□ -0.75
TPM1-223	ENST00000560445	RBMS2	Q15434	407 aa	Known RBP	10.34	□□□□□ -0.75
TPM1-223	ENST00000560445	DMRTA1	Q5VZB9	504 aa		10.34	□□□□□ -0.75
TPM1-223	ENST00000560445	LEMD1	Q68G75	181 aa		10.34	□□□□□ -0.75
TPM1-223	ENST00000560445	C16orf54	Q6UWD8	224 aa		10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms