RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 IGLV1-36A0A0B4J1U3 117 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 C15orf62A8K5M9 175 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 IGHG1P01857 330 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 CISD3P0C7P0 127 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 CRYGAP11844 174 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 HMGA1P17096 107 aaKnown RBP6.87□□□□□ -1.31
USP3-211ENST00000559257 RPL35AP18077 110 aaKnown RBP6.87□□□□□ -1.31
USP3-211ENST00000559257 C6orf201Q7Z4U5 140 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 PCP2Q8IVA1 136 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 LILRA3Q8N6C8 439 aaPredicted RBP6.87□□□□□ -1.31
USP3-211ENST00000559257 IGFBPL1Q8WX77 278 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 RNASE7Q9H1E1 156 aaKnown RBP6.87□□□□□ -1.31
USP3-211ENST00000559257 PCNX3Q9H6A9 2034 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 HEATR5BQ9P2D3 2071 aa6.87□□□□□ -1.31
USP3-211ENST00000559257 TMEM258P61165 79 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 ZNF793Q6ZN11 406 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 C15orf53Q8NAA6 179 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 MYOZ3Q8TDC0 251 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 ELSPBP1Q96BH3 223 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 CHCHD5Q9BSY4 110 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 JPT2Q9H910 190 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 METRNQ9UJH8 293 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 F11RQ9Y624 299 aaKnown RBP6.86□□□□□ -1.31
USP3-211ENST00000559257 A0A1W2PRX2 142 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 MGST3O14880 152 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 STC2O76061 302 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 SCGB1C2P0DMR2 95 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 GAGE2AQ6NT46 116 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 CXCL17Q6UXB2 119 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 RND1Q92730 232 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 MLST8Q9BVC4 326 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 ALKBH4Q9NXW9 302 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 FOXA2Q9Y261 457 aaPredicted RBP6.86□□□□□ -1.31
USP3-211ENST00000559257 PCSK5Q92824 1860 aa6.86□□□□□ -1.31
USP3-211ENST00000559257 TRAV8-2A0A0B4J237 113 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 TMEM202A6NGA9 273 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 NXPH3O95157 252 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 NCR2O95944 276 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 IAPPP10997 89 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 SRYQ05066 204 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 KLRB1Q12918 225 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 FXYD3Q14802 87 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 CST6Q15828 149 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 KLF17Q5JT82 389 aaPredicted RBP6.85□□□□□ -1.31
USP3-211ENST00000559257 RNF44Q7L0R7 432 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 RNF144BQ7Z419 303 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 ANKRD29Q8N6D5 301 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 NPIPB3Q92617 1050 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 DPH3Q96FX2 82 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 Q96M66 194 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 LINC01600Q96MT4 127 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 ODF3Q96PU9 254 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 HDHD3Q9BSH5 251 aaPredicted RBP6.85□□□□□ -1.31
USP3-211ENST00000559257 RAXQ9Y2V3 346 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 SPTBP11277 2137 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 ATG2BQ96BY7 2078 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 IGKV1D-42A0A075B6H8 117 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 CHEK1O14757 476 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 IL4P05112 153 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 IFI6P09912 130 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 ARL14EPLP0DKL9 152 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 RPL18Q07020 188 aaKnown RBP6.85□□□□□ -1.31
USP3-211ENST00000559257 MZT1Q08AG7 82 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 CCL14Q16627 93 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 CLLU1OSQ5K130 101 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 SAP25Q8TEE9 199 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 SPACA5Q96QH8 159 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 HEYLQ9NQ87 328 aaPredicted RBP6.85□□□□□ -1.31
USP3-211ENST00000559257 TCF19Q9Y242 345 aa6.85□□□□□ -1.31
USP3-211ENST00000559257 A0A0J9YW62 118 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 A0A0U1RRA0 63 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 LOC101059948A0A1B0GTJ6 334 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 FAM236AA0A1B0GUQ0 79 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 FAM236BA0A1B0GV22 79 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 ENSAO43768 121 aaKnown RBP6.84□□□□□ -1.31
USP3-211ENST00000559257 SPINT3P49223 89 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 UBE2D3P61077 147 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 RPS18P62269 152 aaKnown RBP6.84□□□□□ -1.31
USP3-211ENST00000559257 UBE2D2P62837 147 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 HBBP68871 147 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 FOXC1Q12948 553 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 SPANXN5Q5MJ07 72 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 ZAR1Q86SH2 424 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 RAB42Q8N4Z0 105 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 KLHDC9Q8NEP7 349 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 MAFAQ8NHW3 353 aaPredicted RBP6.84□□□□□ -1.31
USP3-211ENST00000559257 FAM57AQ8TBR7 257 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 CYB5D2Q8WUJ1 264 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 RITA1Q96K30 269 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 ZNF488Q96MN9 340 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 SCNM1Q9BWG6 230 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 SCN3AQ9NY46 2000 aa6.84□□□□□ -1.31
USP3-211ENST00000559257 ARHGAP21Q5T5U3 1957 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 TRBV25-1A0A075B6N4 114 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 A0A0G2JRQ6 117 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 PGLYRP1O75594 196 aaPredicted RBP6.84□□□□□ -1.32
USP3-211ENST00000559257 CLDN14O95500 239 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 IGLV2-8P01709 118 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 CCL1P22362 96 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 GCHFRP30047 84 aa6.84□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms