RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ZNF688P0C7X2 276 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 SPP1P10451 314 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 DHODHQ02127 395 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 SSBP1Q04837 148 aaKnown RBP8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 MEF2DQ14814 521 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 AARDQ4LEZ3 155 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 FAAP20Q6NZ36 180 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 Q8NAQ8 132 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 OR1S2Q8NGQ3 325 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 Q8WTZ3 238 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 GLYATL2Q8WU03 294 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 RBPMSQ93062 196 aaKnown RBP8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 RTBDNQ9BSG5 229 aaPredicted RBP8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 HRH4Q9H3N8 390 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 NAA60Q9H7X0 242 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 IGHV4-28A0A0C4DH34 117 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 HELTA6NFD8 242 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 KNCNA6PVL3 124 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 CEBPZOSA8MTT3 80 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 IGLL5B9A064 214 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 DISC1C4P0D8 188 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 HNRNPCP07910 306 aaKnown RBP eCLIP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 GIG44P09565 113 aaPredicted RBP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 IGLC1P0CG04 106 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 SLC25A4P12235 298 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 MIFP14174 115 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 OR10J1P30954 320 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 RND2P52198 227 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 AP2S1P53680 142 aaPredicted RBP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 MRPS10P82664 201 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 DHRS2Q13268 280 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 SURF2Q15527 256 aaPredicted RBP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 C2orf83Q53S99 150 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 ACTL10Q5JWF8 245 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 TMEM268Q5VZI3 342 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 PRSS54Q6PEW0 395 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 SELENOHQ8IZQ5 122 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 CENPSQ8N2Z9 138 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 SLC24A4Q8NFF2 622 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 LHFPL5Q8TAF8 219 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 RNASEH2CQ8TDP1 164 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 DCANP1Q8TF63 244 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 MIXL1Q9H2W2 232 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 CACNG5Q9UF02 275 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 U3KQE9 123 aa8.05□□□□□ -1.12
CCDC88C-213ENST00000557455 HECTD4Q9Y4D8 3996 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 CRYM-AS1A6NIL9 109 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 ZNF705EA8MWA4 302 aaPredicted RBP8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 RBMY1A1P0DJD3 496 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 RBMY1CP0DJD4 496 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 C4BPBP20851 252 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 YPEL3P61236 119 aaPredicted RBP8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 RBMY1FQ15415 496 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 PSMG4Q5JS54 123 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 ETFRF1Q6IPR1 90 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 C16orf54Q6UWD8 224 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 GLMPQ8WWB7 406 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 GPR146Q96CH1 333 aa8.04□□□□□ -1.12
CCDC88C-213ENST00000557455 DNAH6Q9C0G6 4158 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 CTDSP2O14595 271 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 NXPH3O95157 252 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 IL4P05112 153 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 AKAIN1P0CW23 69 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 HLA-DMBP28068 263 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 PRR20EP86478 221 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 PRR20CP86479 221 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 PRR20DP86480 221 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 PRR20BP86481 221 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 PRR20AP86496 221 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 SPCS2Q15005 226 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 USF2Q15853 346 aaPredicted RBP8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 LINC00299Q6ZSB3 139 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 NOXA1Q86UR1 476 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 OR4C16Q8NGL9 310 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 SMIM4Q8WVI0 70 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 RAB40CQ96S21 281 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 PRRT1Q99946 306 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 CLEC5AQ9NY25 188 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 CACFD1Q9UGQ2 172 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 TBC1D24Q9ULP9 559 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 APLNQ9ULZ1 77 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 GPR132Q9UNW8 380 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 TMEM56-RWDD3S4R434 201 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 X6R8D5 127 aa8.03□□□□□ -1.12
CCDC88C-213ENST00000557455 TRAV10A0A0B4J240 114 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 SULT1A3P0DMM9 295 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 SULT1A4P0DMN0 295 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 NPY1RP25929 384 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 NUTF2P61970 127 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 SNRPD3P62318 126 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 IL18Q14116 193 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 Q6ZTC4 211 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 CSNK1G2-AS1Q8NCQ2 148 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 OR51S1Q8NGJ8 323 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 TMEM170AQ8WVE7 144 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 NPIPB3Q92617 1050 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 ACY3Q96HD9 319 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 DIRAS2Q96HU8 199 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 RABL2AQ9UBK7 228 aaPredicted RBP8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 RABL2BQ9UNT1 228 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms