RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 C11orf42Q8N5U0 333 aa10.84□□□□□ -0.67
SHMT2-222ENST00000555774 Q8NA96 180 aa10.84□□□□□ -0.67
SHMT2-222ENST00000555774 TMEM116Q8NCL8 245 aa10.84□□□□□ -0.67
SHMT2-222ENST00000555774 TPSG1Q9NRR2 321 aa10.84□□□□□ -0.67
SHMT2-222ENST00000555774 MRPL36Q9P0J6 103 aaKnown RBP10.84□□□□□ -0.67
SHMT2-222ENST00000555774 MRPL27Q9P0M9 148 aaKnown RBP10.84□□□□□ -0.67
SHMT2-222ENST00000555774 B9A039 149 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 M0QZK8 103 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 SPINK4O60575 86 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 RAB4AP20338 218 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 PLP1P60201 277 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 TCF15Q12870 199 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 CBLN4Q9NTU7 201 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 EPDR1Q9UM22 224 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 KLF12Q9Y4X4 402 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 C22orf46C9J442 243 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 ENSAO43768 121 aaKnown RBP10.83□□□□□ -0.68
SHMT2-222ENST00000555774 ZNF253O75346 499 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 RBP4P02753 201 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 RNF224P0DH78 156 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 SRIP30626 198 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 APOBEC3AP31941 199 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-222ENST00000555774 CA7P43166 264 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 UBE2G1P62253 170 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 ATP5L2Q7Z4Y8 100 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 NUDT10Q8NFP7 164 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 NUDT11Q96G61 164 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 MIEN1Q9BRT3 115 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 VAMP8Q9BV40 100 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 SNHG12Q9BXW3 62 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 C7orf69Q9H7B7 122 aa10.83□□□□□ -0.68
SHMT2-222ENST00000555774 SPENQ96T58 3664 aaKnown RBP10.82□□□□□ -0.68
SHMT2-222ENST00000555774 NHLRC2Q8NBF2 726 aa10.82□□□□□ -0.68
SHMT2-222ENST00000555774 OR4B1Q8NGF8 309 aa10.82□□□□□ -0.68
SHMT2-222ENST00000555774 TSKUQ8WUA8 353 aa10.82□□□□□ -0.68
SHMT2-222ENST00000555774 RITA1Q96K30 269 aa10.82□□□□□ -0.68
SHMT2-222ENST00000555774 LINC00479Q96M42 142 aa10.82□□□□□ -0.68
SHMT2-222ENST00000555774 RALYQ9UKM9 306 aaKnown RBP10.82□□□□□ -0.68
SHMT2-222ENST00000555774 TBL2Q9Y4P3 447 aaKnown RBP10.82□□□□□ -0.68
SHMT2-222ENST00000555774 YLPM1P49750 1951 aaKnown RBP10.82□□□□□ -0.68
SHMT2-222ENST00000555774 IGHV2-26A0A0B4J1V2 119 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 A0A1W2PS18 150 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 HYPMO75409 117 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 ZNF324O75467 553 aaPredicted RBP10.81□□□□□ -0.68
SHMT2-222ENST00000555774 IGLV1-47P01700 117 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 CDKN1AP38936 164 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 AMTP48728 403 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 SLC35B1P78383 322 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 RBPJQ06330 500 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 TNXAQ16473 311 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 OR1B1Q8NGR6 318 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 SH3BGRL2Q9UJC5 107 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 FBXL7Q9UJT9 491 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 SVILO95425 2214 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 MOSP00540 346 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 SLC25A5P05141 298 aaKnown RBP10.81□□□□□ -0.68
SHMT2-222ENST00000555774 ORM2P19652 201 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 VN1R17PQ8TDU5 208 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 TMEM68Q96MH6 324 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 RBM14Q96PK6 669 aaKnown RBP10.81□□□□□ -0.68
SHMT2-222ENST00000555774 RNF5Q99942 180 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 NRN1Q9NPD7 142 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 SIGLEC9Q9Y336 463 aa10.81□□□□□ -0.68
SHMT2-222ENST00000555774 OR2J3O76001 311 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 MFAP2P55001 183 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 KLF5Q13887 457 aaPredicted RBP10.8□□□□□ -0.68
SHMT2-222ENST00000555774 KIAA1644Q3SXP7 199 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 CT83Q5H943 113 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 HCP5Q6MZN7 132 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 C19orf35Q6ZS72 473 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 C5orf17Q8NAS9 161 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 NUP35Q8NFH5 326 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 C8orf46Q8TAG6 207 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 FAM168AQ92567 244 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 FMC1Q96HJ9 113 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 GPR82Q96P67 336 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 SRSF8Q9BRL6 282 aaKnown RBP10.8□□□□□ -0.68
SHMT2-222ENST00000555774 ATG101Q9BSB4 218 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 CLEC7AQ9BXN2 247 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 F11RQ9Y624 299 aaKnown RBP10.8□□□□□ -0.68
SHMT2-222ENST00000555774 ZNF318Q5VUA4 2279 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 PLCE1Q9P212 2302 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 TNCP24821 2201 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 TRAV34A0A0B4J273 112 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 TOMM40O96008 361 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 CA1P00915 261 aaPredicted RBP10.8□□□□□ -0.68
SHMT2-222ENST00000555774 IGHV3-48P01763 117 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 CD3EP07766 207 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 NBEAP1P0C6P0 100 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 GP9P14770 177 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 CD33P20138 364 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 Q8N976 141 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 RCHY1Q96PM5 261 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 SSBP3Q9BWW4 388 aaPredicted RBP10.8□□□□□ -0.68
SHMT2-222ENST00000555774 ZNF492Q9P255 531 aa10.8□□□□□ -0.68
SHMT2-222ENST00000555774 SOX21Q9Y651 276 aaPredicted RBP10.8□□□□□ -0.68
SHMT2-222ENST00000555774 IGHV1-3A0A0C4DH29 117 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 PGPA6NDG6 321 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 DIRC3C9JPN6 131 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 BUB1B-PAK6H3BSN5 160 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms