RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ID3Q02535 119 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 TOMM20LQ6UXN7 152 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 OR52B4Q8NGK2 314 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 Q8WTZ3 238 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 GRAMD2BQ96HH9 432 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 METTL26Q96S19 204 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 RAB40CQ96S21 281 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 NEURL2Q9BR09 285 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 SMPXQ9UHP9 88 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 PFDN2Q9UHV9 154 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 STRAPQ9Y3F4 350 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 PRKDCP78527 4128 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 IZUMO1RA6ND01 250 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 IGKV1-17P01599 117 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 IGHV4-30-4P0DP06 118 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 IAPPP10997 89 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 EIF2B2P49770 351 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 TAS2R30P59541 319 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 C12orf45Q8N5I9 185 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 ZBTB8BQ8NAP8 495 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 WDR89Q96FK6 387 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 ACY3Q96HD9 319 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 ZFAND3Q9H8U3 227 aa10.83□□□□□ -0.68
CCDC88C-207ENST00000554051 ZNF785A8K8V0 405 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 CHEK1O14757 476 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 TSC22D2O75157 780 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 TOMM40O96008 361 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 FRMD6-AS1P0C7T7 363 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 NPPCP23582 126 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 CMC4P56277 68 aaPredicted RBP10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 Q8N1Y9 231 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 NPIPB3Q92617 1050 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 FAM110AQ9BQ89 295 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 RHPN1-AS1Q9BWJ2 59 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 MAGT1Q9H0U3 335 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 TUBA4BQ9H853 241 aa10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 MRPL36Q9P0J6 103 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 PAIP2BQ9ULR5 123 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-207ENST00000554051 TRAV2A0A0B4J234 112 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 ZFP92A6NM28 416 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 SNRPGP15A8MWD9 76 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 SSSCA1O60232 199 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 CFDP00746 253 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 EDN2P20800 178 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 S100A7P31151 101 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 PAFAH1B2P68402 229 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 TIGITQ495A1 244 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 SPANXN5Q5MJ07 72 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 SMIM8Q96KF7 97 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 SEC22CQ9BRL7 303 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 VSIRQ9H7M9 311 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 C19orf73Q9NVV2 129 aa10.81□□□□□ -0.68
CCDC88C-207ENST00000554051 IGHV3OR16-8A0A075B7F1 116 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 MPTX1A8MV57 137 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 ZNF207O43670 478 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 SCGB1D2O95969 90 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 RD3LP0DJH9 198 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 PVALBP20472 110 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 CRYBB3P26998 211 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 POLR2GP62487 172 aaKnown RBP eCLIP10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 OR8G2PQ6IF36 304 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 GSG1LQ6UXU4 331 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 ZNF414Q96IQ9 312 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 ZMAT4Q9H898 229 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 PSENENQ9NZ42 101 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 GSKIPQ9P0R6 139 aa10.8□□□□□ -0.68
CCDC88C-207ENST00000554051 C5orf51A6NDU8 294 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 HELTA6NFD8 242 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 OR11H12B2RN74 326 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 FNDC10F2Z333 226 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 L7N2F9 121 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 HNRNPCP07910 306 aaKnown RBP eCLIP10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 VAMP2P63027 116 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 GAMTQ14353 236 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 MLANAQ16655 118 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 C11orf87Q6NUJ2 197 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 NRARPQ7Z6K4 114 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 OR51G1Q8NGK1 321 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 C2orf50Q96LR7 162 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 RNF2Q99496 336 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 TRGV9Q99603 122 aa10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 RCL1Q9Y2P8 373 aaKnown RBP10.79□□□□□ -0.68
CCDC88C-207ENST00000554051 FAM25EA8MYX2 175 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 PRSS46E5RG02 174 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 INMT-MINDY4F8WBC2 141 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 H3BP45 60 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 IL4P05112 153 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 CD7P09564 240 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 AP2S1P53680 142 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 IFITM3Q01628 133 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 AKR1C1Q04828 323 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 THAP8Q8NA92 274 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 RNF125Q96EQ8 232 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 MARVELD1Q9BSK0 173 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 MGAT4CQ9UBM8 478 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 RABAC1Q9UI14 185 aa10.78□□□□□ -0.68
CCDC88C-207ENST00000554051 CCSO14618 274 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 PTTG1O95997 202 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 P2RY1P47900 373 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 DLK1P80370 383 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms