RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PRM2P04554 102 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 HBA1P69905 142 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 PABPC1L2AQ5JQF8 200 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 PP632Q6XCG6 107 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 OR52L1Q8NGH7 329 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 OR8D2Q9GZM6 311 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 RNASE7Q9H1E1 156 aaKnown RBP2.92□□□□□ -1.94
LIMA1-210ENST00000552045 C11orf68Q9H3H3 251 aaKnown RBP2.92□□□□□ -1.94
LIMA1-210ENST00000552045 HHLA3Q9XRX5 114 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 ZNF292O60281 2723 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 LY75O60449 1722 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 ASH1LQ9NR48 2969 aaKnown RBP2.92□□□□□ -1.94
LIMA1-210ENST00000552045 SCN11AQ9UI33 1791 aa2.92□□□□□ -1.94
LIMA1-210ENST00000552045 ROBO3Q96MS0 1386 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 FNDC10F2Z333 226 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 H3BT86 120 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 KLRC4O43908 158 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 CREBL2O60519 120 aaPredicted RBP2.91□□□□□ -1.94
LIMA1-210ENST00000552045 C1QAP02745 245 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 HLA-DMBP28068 263 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 PPP1R2P41236 205 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 RPL28P46779 137 aaKnown RBP2.91□□□□□ -1.94
LIMA1-210ENST00000552045 TPI1P60174 286 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 GLO1Q04760 184 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 ZNF181Q2M3W8 571 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 PPP1R2P3Q6NXS1 205 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 OOSP2Q86WS3 158 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 CT55Q8WUE5 264 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 MRPS24Q96EL2 167 aaKnown RBP2.91□□□□□ -1.94
LIMA1-210ENST00000552045 CEP19Q96LK0 163 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 DNAJC30Q96LL9 226 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 TPRP12270 2363 aaKnown RBP2.91□□□□□ -1.94
LIMA1-210ENST00000552045 WNK3Q9BYP7 1800 aa2.91□□□□□ -1.94
LIMA1-210ENST00000552045 E9PCH4 1651 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 IGKV1D-43A0A0B4J1Z2 117 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 EXOC1LA0A1B0GW35 172 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 GGT3PA6NGU5 568 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 PIRO00625 290 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 LGALS1P09382 135 aaKnown RBP2.9□□□□□ -1.95
LIMA1-210ENST00000552045 PSMB8P28062 276 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 RAB14P61106 215 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 MEF2BQ02080 365 aaPredicted RBP2.9□□□□□ -1.95
LIMA1-210ENST00000552045 ZNF90Q03938 601 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 RPL18Q07020 188 aaKnown RBP2.9□□□□□ -1.95
LIMA1-210ENST00000552045 AADACL3Q5VUY0 350 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 HACD4Q5VWC8 232 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 LYZL1Q6UWQ5 148 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 ZNF705AQ6ZN79 300 aaPredicted RBP2.9□□□□□ -1.95
LIMA1-210ENST00000552045 GDPD1Q8N9F7 314 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 PXT1Q8NFP0 134 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 PHB2Q99623 299 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 UQCC1Q9NVA1 299 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 NDUFB11Q9NX14 153 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 TP73-AS1Q9UF72 201 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 NAT8Q9UHE5 227 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 TIMM22Q9Y584 194 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 FAM208BQ5VWN6 2430 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 TRPM7Q96QT4 1865 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 MRC1P22897 1456 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 ACACBO00763 2458 aa2.9□□□□□ -1.95
LIMA1-210ENST00000552045 AKAP11Q9UKA4 1901 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 REV3LO60673 3130 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 NCOR1O75376 2440 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 USP9XQ93008 2570 aaPredicted RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 DPRXA6NFQ7 191 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 FAM159BA6NKW6 160 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 OR2B3O76000 313 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 IGKV1-5P01602 117 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 CSRP1P21291 193 aaKnown RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 PTPRZ1P23471 2315 aaPredicted RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BOP23527 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 MSNP26038 577 aaKnown RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 KRTAP5-9P26371 169 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BBP33778 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HINT1P49773 126 aaPredicted RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BDP58876 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H4AP62805 103 aaKnown RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BCP62807 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST2H2BEQ16778 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 C12orf74Q32Q52 190 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 C9orf64Q5T6V5 341 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 TEX36Q5VZQ5 186 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 RPL22L1Q6P5R6 122 aaKnown RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 NAV2Q8IVL1 2488 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 OR13C4Q8NGS5 318 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 MCFD2Q8NI22 146 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 PHOSPHO2Q8TCD6 241 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BHQ93079 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 TOMM6Q96B49 74 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BNQ99877 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 HIST1H2BMQ99879 126 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 DERL1Q9BUN8 251 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 STOML2Q9UJZ1 356 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 FAM32AQ9Y421 112 aaKnown RBP2.89□□□□□ -1.95
LIMA1-210ENST00000552045 TIMM9Q9Y5J7 89 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 NCOR2Q9Y618 2525 aa2.89□□□□□ -1.95
LIMA1-210ENST00000552045 MYO9BQ13459 2157 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 KIF24Q5T7B8 1368 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 ZNF462Q96JM2 2506 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms