RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SOSTQ9BQB4 213 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 TRAV30A0A087WSZ9 112 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 MPTX1A8MV57 137 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 CRYBB3P26998 211 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 PRSS54Q6PEW0 395 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 STXBP6Q8NFX7 210 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 OR1S2Q8NGQ3 325 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 RNASEH2CQ8TDP1 164 aaKnown RBP12.01□□□□□ -0.49
VPS29-207ENST00000549970 TMEM170AQ8WVE7 144 aa12.01□□□□□ -0.49
VPS29-207ENST00000549970 NARS2Q96I59 477 aaKnown RBP12.01□□□□□ -0.49
VPS29-207ENST00000549970 TRAV2A0A0B4J234 112 aa12□□□□□ -0.49
VPS29-207ENST00000549970 IGLC1P0CG04 106 aa12□□□□□ -0.49
VPS29-207ENST00000549970 SLC25A4P12235 298 aa12□□□□□ -0.49
VPS29-207ENST00000549970 NPY1RP25929 384 aa12□□□□□ -0.49
VPS29-207ENST00000549970 OR10J1P30954 320 aa12□□□□□ -0.49
VPS29-207ENST00000549970 P2RY1P47900 373 aa12□□□□□ -0.49
VPS29-207ENST00000549970 LYZL2Q7Z4W2 148 aa12□□□□□ -0.49
VPS29-207ENST00000549970 A0A0B4J2A0 478 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 NUPR2A6NF83 97 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 CA1P00915 261 aaPredicted RBP11.99□□□□□ -0.49
VPS29-207ENST00000549970 SUPT4H1P63272 117 aaKnown RBP11.99□□□□□ -0.49
VPS29-207ENST00000549970 RBMS2Q15434 407 aaKnown RBP11.99□□□□□ -0.49
VPS29-207ENST00000549970 PYDC2Q56P42 97 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 NMSQ5H8A3 153 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 TMEM217Q8N7C4 229 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 Q8WTZ3 238 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 ACY3Q96HD9 319 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 CACFD1Q9UGQ2 172 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 SHPKQ9UHJ6 478 aa11.99□□□□□ -0.49
VPS29-207ENST00000549970 CCDC160A6NGH7 325 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 IFNA10P01566 189 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 ANXA3P12429 323 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 FAUP35544 74 aaKnown RBP11.98□□□□□ -0.49
VPS29-207ENST00000549970 CCR6P51684 374 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 KLF9Q13886 244 aaPredicted RBP11.98□□□□□ -0.49
VPS29-207ENST00000549970 SMCO1Q147U7 214 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 ETFRF1Q6IPR1 90 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 TMED4Q7Z7H5 227 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 NOXA1Q86UR1 476 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 LGI3Q8N145 548 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 GATAD1Q8WUU5 269 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 NPIPB3Q92617 1050 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 TRIM63Q969Q1 353 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 GRAMD2BQ96HH9 432 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 RARRES2Q99969 163 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 RBKSQ9H477 322 aa11.98□□□□□ -0.49
VPS29-207ENST00000549970 BIRC6Q9NR09 4857 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 K7EQG2 157 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 HNRNPCP07910 306 aaKnown RBP eCLIP11.97□□□□□ -0.49
VPS29-207ENST00000549970 ZNF688P0C7X2 276 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 ATF4P18848 351 aaPredicted RBP11.97□□□□□ -0.49
VPS29-207ENST00000549970 YPEL3P61236 119 aaPredicted RBP11.97□□□□□ -0.49
VPS29-207ENST00000549970 SRPXP78539 464 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 STHQ8IWL8 128 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 TOMM5Q8N4H5 51 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 OR11H2Q8NH07 326 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 DTD1Q8TEA8 209 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 HSPB7Q9UBY9 170 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 U3KQ87 197 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 V9GYH0 126 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 AGRNO00468 2067 aa11.97□□□□□ -0.49
VPS29-207ENST00000549970 IL4P05112 153 aa11.96□□□□□ -0.49
VPS29-207ENST00000549970 AP3S2P59780 193 aa11.96□□□□□ -0.49
VPS29-207ENST00000549970 CEMP1Q6PRD7 247 aaPredicted RBP11.96□□□□□ -0.49
VPS29-207ENST00000549970 OR1S1Q8NH92 325 aa11.96□□□□□ -0.49
VPS29-207ENST00000549970 DCANP1Q8TF63 244 aa11.96□□□□□ -0.49
VPS29-207ENST00000549970 LINC00476Q8WZB0 136 aa11.96□□□□□ -0.49
VPS29-207ENST00000549970 U3KQE9 123 aa11.96□□□□□ -0.49
VPS29-207ENST00000549970 KMT2AQ03164 3969 aa11.95□□□□□ -0.5
VPS29-207ENST00000549970 IFNA4P05014 189 aa11.95□□□□□ -0.5
VPS29-207ENST00000549970 EIF2B2P49770 351 aaKnown RBP11.95□□□□□ -0.5
VPS29-207ENST00000549970 USF2Q15853 346 aaPredicted RBP11.95□□□□□ -0.5
VPS29-207ENST00000549970 C16orf54Q6UWD8 224 aa11.95□□□□□ -0.5
VPS29-207ENST00000549970 HELTA6NFD8 242 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 KNCNA6PVL3 124 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 LY6G6CO95867 125 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 TOMM40O96008 361 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 RD3LP0DJH9 198 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 VAMP1P23763 118 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 S100A5P33763 92 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 DHRS2Q13268 280 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 ZNF79Q15937 498 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 TMEM128Q5BJH2 165 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 TRPT1Q86TN4 253 aaKnown RBP11.94□□□□□ -0.5
VPS29-207ENST00000549970 GLMPQ8WWB7 406 aa11.94□□□□□ -0.5
VPS29-207ENST00000549970 KLK5Q9Y337 293 aaPredicted RBP11.94□□□□□ -0.5
VPS29-207ENST00000549970 DEFB4AO15263 64 aa11.93□□□□□ -0.5
VPS29-207ENST00000549970 PSG1P11464 419 aa11.93□□□□□ -0.5
VPS29-207ENST00000549970 PHLDA1Q8WV24 401 aaPredicted RBP11.93□□□□□ -0.5
VPS29-207ENST00000549970 C11orf68Q9H3H3 251 aaKnown RBP11.93□□□□□ -0.5
VPS29-207ENST00000549970 PIGBOS1A0A0B4J2F0 54 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 DUXBA0A1W2PPF3 345 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 IAPPP10997 89 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 AP2S1P53680 142 aaPredicted RBP11.92□□□□□ -0.5
VPS29-207ENST00000549970 NANOS2P60321 138 aaKnown RBP11.92□□□□□ -0.5
VPS29-207ENST00000549970 PSMG4Q5JS54 123 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 ACTL10Q5JWF8 245 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 OR51G1Q8NGK1 321 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 SLC35E1Q96K37 410 aa11.92□□□□□ -0.5
VPS29-207ENST00000549970 PBDC1Q9BVG4 233 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms