RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 LGI3Q8N145 548 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 TOMM5Q8N4H5 51 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 OR1S2Q8NGQ3 325 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 TMEM170AQ8WVE7 144 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 CSTL1Q9H114 145 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 HSPB7Q9UBY9 170 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 U3KQ87 197 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 V9GYH0 126 aa13.76□□□□□ -0.21
CHMP1A-207ENST00000549328 STARD9Q9P2P6 4700 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 IGHV3-66A0A0C4DH42 116 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 CCDC160A6NGH7 325 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 IGLC1P0CG04 106 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 NPY1RP25929 384 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 RND2P52198 227 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 YPEL3P61236 119 aaPredicted RBP13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 RPL11P62913 178 aaKnown RBP13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 TIGITQ495A1 244 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 TMEM128Q5BJH2 165 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 LYZL2Q7Z4W2 148 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 NARS2Q96I59 477 aaKnown RBP13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 PRR13Q9NZ81 148 aa13.75□□□□□ -0.21
CHMP1A-207ENST00000549328 MPTX1A8MV57 137 aa13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 JTBO76095 146 aa13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 ATF4P18848 351 aaPredicted RBP13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 ATP5IP56385 69 aaPredicted RBP13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 ZNF124Q15973 351 aa13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 LYG2Q86SG7 212 aa13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 Q8WTZ3 238 aa13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 SLC25A21Q9BQT8 299 aaPredicted RBP13.74□□□□□ -0.21
CHMP1A-207ENST00000549328 A0A0J9YWU9 116 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 DUXBA0A1W2PPF3 345 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 ZNF701M0R085 212 aaPredicted RBP13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 IFNA10P01566 189 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 OR10J1P30954 320 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 P2RY1P47900 373 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 ZNF79Q15937 498 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 CCDC190Q86UF4 302 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 DTD1Q8TEA8 209 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 GRAMD2BQ96HH9 432 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 RBM38Q9H0Z9 239 aaKnown RBP13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 U3KQE9 123 aa13.73□□□□□ -0.21
CHMP1A-207ENST00000549328 NXPH3O95157 252 aa13.72□□□□□ -0.21
CHMP1A-207ENST00000549328 GATAD1Q8WUU5 269 aa13.72□□□□□ -0.21
CHMP1A-207ENST00000549328 RBKSQ9H477 322 aa13.72□□□□□ -0.21
CHMP1A-207ENST00000549328 RABAC1Q9UI14 185 aa13.72□□□□□ -0.21
CHMP1A-207ENST00000549328 SACSQ9NZJ4 4579 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 K7EQG2 157 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 EIF2B2P49770 351 aaKnown RBP13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 DEFB131AP59861 70 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 RBMS2Q15434 407 aaKnown RBP13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 TMED4Q7Z7H5 227 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 TMEM217Q8N7C4 229 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 LRTM2Q8N967 370 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 NPIPB3Q92617 1050 aa13.71□□□□□ -0.21
CHMP1A-207ENST00000549328 PITX3O75364 302 aa13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 SLC25A6P12236 298 aa13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 AP2S1P53680 142 aaPredicted RBP13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 SPANXN2Q5MJ10 180 aa13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 STXBP6Q8NFX7 210 aa13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 OR1S1Q8NH92 325 aa13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 ACY3Q96HD9 319 aa13.7□□□□□ -0.22
CHMP1A-207ENST00000549328 HELTA6NFD8 242 aa13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 TOMM40O96008 361 aa13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 HNRNPCP07910 306 aaKnown RBP eCLIP13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 RD3LP0DJH9 198 aa13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 C16orf54Q6UWD8 224 aa13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 FAM24BQ8N5W8 94 aa13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 DCANP1Q8TF63 244 aa13.69□□□□□ -0.22
CHMP1A-207ENST00000549328 FAM90A26D6RGX4 464 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 IFNA4P05014 189 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 IL4P05112 153 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 VAMP1P23763 118 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 GPX4P36969 197 aaPredicted RBP13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 EWSR1Q01844 656 aaKnown RBP eCLIP13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 LEMD1Q68G75 181 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 GLMPQ8WWB7 406 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 RARRES2Q99969 163 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 TMED3Q9Y3Q3 217 aa13.68□□□□□ -0.22
CHMP1A-207ENST00000549328 CXorf65A6NEN9 183 aa13.67□□□□□ -0.22
CHMP1A-207ENST00000549328 NUPR2A6NF83 97 aa13.67□□□□□ -0.22
CHMP1A-207ENST00000549328 USF2Q15853 346 aaPredicted RBP13.67□□□□□ -0.22
CHMP1A-207ENST00000549328 STHQ8IWL8 128 aa13.67□□□□□ -0.22
CHMP1A-207ENST00000549328 LYSTQ99698 3801 aa13.67□□□□□ -0.22
CHMP1A-207ENST00000549328 SFT2D2O95562 160 aa13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 CA1P00915 261 aaPredicted RBP13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 PSG1P11464 419 aa13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 UBE2MP61081 183 aaKnown RBP13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 CENPSQ8N2Z9 138 aa13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 OR51G1Q8NGK1 321 aa13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 SRRQ9GZT4 340 aa13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 RYR2Q92736 4967 aa13.66□□□□□ -0.22
CHMP1A-207ENST00000549328 BUB3O43684 328 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 MED6O75586 246 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 RAB11AP62491 216 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 DHRS2Q13268 280 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 PPP1R1AQ13522 171 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 PMS2P11Q13670 270 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 GAMTQ14353 236 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 TMEM41BQ5BJD5 291 aa13.65□□□□□ -0.22
CHMP1A-207ENST00000549328 CEMP1Q6PRD7 247 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms