RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 TMEM177Q53S58 311 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 ETFRF1Q6IPR1 90 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 VWA1Q6PCB0 445 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF705AQ6ZN79 300 aaPredicted RBP5.15□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF788Q6ZQV5 615 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 MIR17HGQ75NE6 70 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 PDPNQ86YL7 162 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 LINC00311Q8N616 119 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 THAP8Q8NA92 274 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 C9orf106Q8NAJ2 232 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 ST6GALNAC3Q8NDV1 305 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF596Q8TC21 504 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 SNRNP40Q96DI7 357 aaKnown RBP5.15□□□□□ -1.59
SYNE1-233ENST00000535896 MBD6Q96DN6 1003 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 GRAMD2BQ96HH9 432 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM208Q9BTX3 173 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 NRN1Q9NPD7 142 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 SLC35D1Q9NTN3 355 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 MRPS16Q9Y3D3 137 aaKnown RBP5.15□□□□□ -1.59
SYNE1-233ENST00000535896 GOLT1BQ9Y3E0 138 aa5.15□□□□□ -1.59
SYNE1-233ENST00000535896 AMMECR1Q9Y4X0 333 aaPredicted RBP5.15□□□□□ -1.59
SYNE1-233ENST00000535896 ZGRF1Q86YA3 2104 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 HIVEP3Q5T1R4 2406 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 UBR5O95071 2799 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 A0A1W2PS18 150 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 PRSS47A8MTI9 375 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 CORTO00230 105 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 BMPR1BO00238 502 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 SMAD7O15105 426 aaKnown RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 APCSP02743 223 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF25P17030 456 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 BMP5P22003 454 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF137PP52743 207 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 RPS16P62249 146 aaKnown RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 UBE2L3P68036 154 aaKnown RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 RBPJQ06330 500 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 OR5I1Q13606 314 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 SPATA31B1PQ5VZV4 182 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 PVRIGQ6DKI7 326 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 FAM53AQ6NSI3 398 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 MOGAT3Q86VF5 341 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 VKORC1L1Q8N0U8 176 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 LYG1Q8N1E2 194 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 Q8N976 141 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 NUP37Q8NFH4 326 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 OR5AN1Q8NGI8 311 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 OR10X1Q8NGY0 326 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM167AQ8TBQ9 72 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 VN1R17PQ8TDU5 208 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 TSKUQ8WUA8 353 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 BORCS7Q96B45 105 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 STARD4Q96DR4 205 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF503Q96F45 646 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 FAM167A-AS1Q96KT0 104 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 DCTN5Q9BTE1 182 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 GFRA4Q9GZZ7 299 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF430Q9H8G1 570 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-233ENST00000535896 LPAR2Q9HBW0 351 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 DNAJC4Q9NNZ3 241 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 NDUFA4L2Q9NRX3 87 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 FBXL7Q9UJT9 491 aa5.14□□□□□ -1.59
SYNE1-233ENST00000535896 USP9XQ93008 2570 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-233ENST00000535896 IGKV1OR2-108A0A075B7D4 117 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 TEX50A0A1B0GTY4 177 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 A0A1B0GUS0 222 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 TCRBV4S1A1TA0A5B7 111 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 DPRXA6NFQ7 191 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 PEX7O00628 323 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 CRXO43186 299 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-233ENST00000535896 FOXH1O75593 365 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 AGFG2O95081 481 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 SAA1P0DJI8 122 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-233ENST00000535896 CT45A6P0DMU7 189 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 CT45A5P0DMU8 189 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 CT45A7P0DMV0 189 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 IGLC2P0DOY2 106 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 IGLC3P0DOY3 106 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 IRF2P14316 349 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 TNFRSF1AP19438 455 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 PMCHP20382 165 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 SRIP30626 198 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 CDKN1AP38936 164 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 REG1BP48304 166 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 LINC00205P59089 165 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 RPL8P62917 257 aaKnown RBP5.13□□□□□ -1.59
SYNE1-233ENST00000535896 LTC4SQ16873 150 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 SPATA45Q537H7 98 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 PRR30Q53SZ7 412 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-233ENST00000535896 DOLPP1Q86YN1 238 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 ZNRF1Q8ND25 227 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 OR2D3Q8NGH3 330 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 OR4C13Q8NGP0 309 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 C18orf32Q8TCD1 76 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 ORAOV1Q8WV07 137 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 C22orf15Q8WYQ4 148 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM186Q96B77 213 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 WFIKKN1Q96NZ8 548 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 GAFA1Q96PS6 74 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 SLC25A2Q9BXI2 301 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF492Q9P255 531 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms