RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TBL2Q9Y4P3 447 aaKnown RBP15.54■□□□□ 0.08
VPS28-213ENST00000530983 PLXNB1O43157 2135 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 TCRBV4S1A1TA0A5B7 111 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 NDUFB8O95169 186 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 SRIP30626 198 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 ZNF329Q86UD4 541 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 WFDC8Q8IUA0 241 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 H1FXQ92522 213 aaKnown RBP15.53■□□□□ 0.08
VPS28-213ENST00000530983 KCNS1Q96KK3 526 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 PAXXQ9BUH6 204 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 ZNF586Q9NXT0 402 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 KALRNO60229 2985 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 AKAP13Q12802 2813 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 ADGRG4Q8IZF6 3080 aa15.53■□□□□ 0.08
VPS28-213ENST00000530983 A0A1W2PS18 150 aa15.52■□□□□ 0.08
VPS28-213ENST00000530983 IZUMO1RA6ND01 250 aa15.52■□□□□ 0.08
VPS28-213ENST00000530983 SPATA45Q537H7 98 aa15.52■□□□□ 0.08
VPS28-213ENST00000530983 ST6GALNAC6Q969X2 333 aa15.52■□□□□ 0.08
VPS28-213ENST00000530983 SSBP3Q9BWW4 388 aaPredicted RBP15.52■□□□□ 0.08
VPS28-213ENST00000530983 SAP30LQ9HAJ7 183 aa15.52■□□□□ 0.08
VPS28-213ENST00000530983 PPIAL4EA0A075B759 164 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 PPIAL4DF5H284 164 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 TMEM178BH3BS89 294 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 ZNF253O75346 499 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 PPIAL4FP0DN26 164 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 LYPD2Q6UXB3 125 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 OR1L4Q8NGR5 311 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 ZNF596Q8TC21 504 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 NRN1Q9NPD7 142 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 ATMQ13315 3056 aa15.52■□□□□ 0.07
VPS28-213ENST00000530983 AMTP48728 403 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 BSPH1Q075Z2 132 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 FAM71F2Q6NXP2 309 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 THAP8Q8NA92 274 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 TMEM186Q96B77 213 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 FXYD5Q96DB9 178 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 MBD6Q96DN6 1003 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 TPSG1Q9NRR2 321 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 MAP1BP46821 2468 aaKnown RBP15.51■□□□□ 0.07
VPS28-213ENST00000530983 TRAV34A0A0B4J273 112 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 A0A0G2JNJ9 132 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 C16orf97H3BN30 126 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 PEX7O00628 323 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 LINC00311Q8N616 119 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 Q9UFV3 132 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 WASHC3Q9Y3C0 194 aa15.51■□□□□ 0.07
VPS28-213ENST00000530983 TNFRSF13BO14836 293 aaPredicted RBP15.5■□□□□ 0.07
VPS28-213ENST00000530983 BPIFB3P59826 476 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 SLAQ13239 276 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 FAM231DQ6ZW35 169 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 CCL17Q92583 94 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 DCHS1Q96JQ0 3298 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 SLC25A17O43808 307 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 HYPMO75409 117 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 APCSP02743 223 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 REG1AP05451 166 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 THBDP07204 575 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 SUB1P53999 127 aaKnown RBP eCLIP15.5■□□□□ 0.07
VPS28-213ENST00000530983 MRGPRG-AS1Q2M3A8 158 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 RUSC1-AS1Q66K80 236 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 C8orf31Q8N9H6 132 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 RITA1Q96K30 269 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 CTSZQ9UBR2 303 aa15.5■□□□□ 0.07
VPS28-213ENST00000530983 DMXL2Q8TDJ6 3036 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 A0A1W2PPI3 338 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 IGLC2P0DOY2 106 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 IGLC3P0DOY3 106 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 PMCHP20382 165 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 UQCR10Q9UDW1 63 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 ZGRF1Q86YA3 2104 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 NDUFB3O43676 98 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 ZNF324O75467 553 aaPredicted RBP15.49■□□□□ 0.07
VPS28-213ENST00000530983 PLAUP00749 431 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 LINC00305Q7Z4B0 112 aa15.49■□□□□ 0.07
VPS28-213ENST00000530983 WIPF2Q8TF74 440 aaPredicted RBP15.49■□□□□ 0.07
VPS28-213ENST00000530983 PKDREJQ9NTG1 2253 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 LOXP28300 417 aaPredicted RBP15.48■□□□□ 0.07
VPS28-213ENST00000530983 MYCNOSP40205 109 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 ZNF137PP52743 207 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 DLX6P56179 175 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 LRRC10Q5BKY1 277 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 Q6ZN92 141 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 NUDT10Q8NFP7 164 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 NUDT11Q96G61 164 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 ZNF331Q9NQX6 463 aaPredicted RBP15.48■□□□□ 0.07
VPS28-213ENST00000530983 ZNF292O60281 2723 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 C22orf46C9J442 243 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 GNG5P63218 68 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 ANKRD39Q53RE8 183 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 LAMTOR2Q9Y2Q5 125 aa15.48■□□□□ 0.07
VPS28-213ENST00000530983 CCL25O15444 150 aa15.47■□□□□ 0.07
VPS28-213ENST00000530983 NIT1Q86X76 327 aa15.47■□□□□ 0.07
VPS28-213ENST00000530983 NUP35Q8NFH5 326 aa15.47■□□□□ 0.07
VPS28-213ENST00000530983 TXN2Q99757 166 aa15.47■□□□□ 0.07
VPS28-213ENST00000530983 C7orf69Q9H7B7 122 aa15.47■□□□□ 0.07
VPS28-213ENST00000530983 PCNX1Q96RV3 2341 aa15.47■□□□□ 0.07
VPS28-213ENST00000530983 ANKRD11Q6UB99 2663 aaPredicted RBP15.47■□□□□ 0.07
VPS28-213ENST00000530983 MOSP00540 346 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 TBR1Q16650 682 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 VMA21Q3ZAQ7 101 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms