RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 MLANAQ16655 118 aa12.17□□□□□ -0.46
LSM1-205ENST00000523511 DNAH9Q9NYC9 4486 aa12.17□□□□□ -0.46
LSM1-205ENST00000523511 COL7A1Q02388 2944 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 IGHV3-49A0A0A0MS15 119 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 NDUFB6O95139 128 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 FABP1P07148 127 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 OR10J1P30954 320 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 GPX4P36969 197 aaPredicted RBP12.16□□□□□ -0.46
LSM1-205ENST00000523511 RND2P52198 227 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 AP2S1P53680 142 aaPredicted RBP12.16□□□□□ -0.46
LSM1-205ENST00000523511 PPP1R1AQ13522 171 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 PRSS54Q6PEW0 395 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 TCF24Q7RTU0 167 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 WFDC10AQ9H1F0 79 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 VSIRQ9H7M9 311 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 UBQLN2Q9UHD9 624 aa12.16□□□□□ -0.46
LSM1-205ENST00000523511 IGKV3-7A0A075B6H7 116 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 TRAV2A0A0B4J234 112 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 LINC00854A0A1B0GVQ3 168 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 RD3LP0DJH9 198 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 TIGITQ495A1 244 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 STPG3Q8N7X2 389 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 NPIPB3Q92617 1050 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 ACY3Q96HD9 319 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 ZFAND3Q9H8U3 227 aa12.15□□□□□ -0.46
LSM1-205ENST00000523511 IGHV3OR16-13A0A075B7E8 117 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 IGHV3-74A0A0B4J1X5 117 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 KIR2DL5BA0A0G2JN68 375 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 KIR2DL5BA0A0G2JPC4 375 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 PITX3O75364 302 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 DFFBO76075 338 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 HOXB5P09067 269 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 CRYBB3P26998 211 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 TFPI2P48307 235 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 C4orf46Q504U0 113 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 FAM90A2PQ658T7 463 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 LINC00299Q6ZSB3 139 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 KIR2DL5AQ8N109 375 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 KIR2DL5BQ8NHK3 375 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 ST8SIA2Q92186 375 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 SLC35E1Q96K37 410 aa12.14□□□□□ -0.47
LSM1-205ENST00000523511 C9orf170A2RU37 121 aa12.13□□□□□ -0.47
LSM1-205ENST00000523511 HELTA6NFD8 242 aa12.13□□□□□ -0.47
LSM1-205ENST00000523511 IGKV1-17P01599 117 aa12.13□□□□□ -0.47
LSM1-205ENST00000523511 IGLC1P0CG04 106 aa12.13□□□□□ -0.47
LSM1-205ENST00000523511 IL7P13232 177 aa12.13□□□□□ -0.47
LSM1-205ENST00000523511 NUP62P37198 522 aaPredicted RBP12.13□□□□□ -0.47
LSM1-205ENST00000523511 GBGT1Q8N5D6 347 aa12.13□□□□□ -0.47
LSM1-205ENST00000523511 MRPL36Q9P0J6 103 aaKnown RBP12.13□□□□□ -0.47
LSM1-205ENST00000523511 PAIP2BQ9ULR5 123 aaKnown RBP12.13□□□□□ -0.47
LSM1-205ENST00000523511 ZFP92A6NM28 416 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 WRBO00258 174 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 SYNGR2O43760 224 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 HNRNPCP07910 306 aaKnown RBP eCLIP12.12□□□□□ -0.47
LSM1-205ENST00000523511 OR4E1P0C645 316 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 Q6ZWC4 215 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 WFDC3Q8IUB2 231 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 MS4A6AQ9H2W1 248 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 EDA2RQ9HAV5 297 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 RABAC1Q9UI14 185 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 TP53TG1Q9Y2A0 90 aa12.12□□□□□ -0.47
LSM1-205ENST00000523511 IGHV3-66A0A0C4DH42 116 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 TOMM40O96008 361 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 IL4P05112 153 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 S100A7P31151 101 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 P2RY1P47900 373 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 ODF3L2Q3SX64 289 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 CASC10Q5T4H9 136 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 GGNBP1Q5YKI7 109 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 LYG2Q86SG7 212 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 ZNF414Q96IQ9 312 aa12.11□□□□□ -0.47
LSM1-205ENST00000523511 SNRPGP15A8MWD9 76 aa12.1□□□□□ -0.47
LSM1-205ENST00000523511 CFDP00746 253 aaPredicted RBP12.1□□□□□ -0.47
LSM1-205ENST00000523511 APOHP02749 345 aaPredicted RBP12.1□□□□□ -0.47
LSM1-205ENST00000523511 IAPPP10997 89 aa12.1□□□□□ -0.47
LSM1-205ENST00000523511 OR51G1Q8NGK1 321 aa12.1□□□□□ -0.47
LSM1-205ENST00000523511 TMEM170AQ8WVE7 144 aa12.1□□□□□ -0.47
LSM1-205ENST00000523511 S100ZQ8WXG8 99 aa12.1□□□□□ -0.47
LSM1-205ENST00000523511 CCDC32Q9BV29 185 aa12.1□□□□□ -0.47
LSM1-205ENST00000523511 LYRM1O43325 122 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 SPRY2O43597 315 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 DHRS2Q13268 280 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 APRG1Q8IVJ8 170 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 STXBP6Q8NFX7 210 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 SDHCQ99643 169 aaPredicted RBP12.09□□□□□ -0.47
LSM1-205ENST00000523511 CSTL1Q9H114 145 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 RETNQ9HD89 108 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 FLVCR2Q9UPI3 526 aa12.09□□□□□ -0.47
LSM1-205ENST00000523511 STRAPQ9Y3F4 350 aaKnown RBP12.09□□□□□ -0.47
LSM1-205ENST00000523511 MPTX1A8MV57 137 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 PSG1P11464 419 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 RPL35AP18077 110 aaKnown RBP12.08□□□□□ -0.48
LSM1-205ENST00000523511 NKX2-1P43699 371 aaPredicted RBP12.08□□□□□ -0.48
LSM1-205ENST00000523511 GAMTQ14353 236 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 SPANXN5Q5MJ07 72 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 LILRB2Q8N423 598 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 MAGT1Q9H0U3 335 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 MAP6D1Q9H9H5 199 aa12.08□□□□□ -0.48
LSM1-205ENST00000523511 ANXA7P20073 488 aaKnown RBP12.07□□□□□ -0.48
LSM1-205ENST00000523511 ID3Q02535 119 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms