RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 GIPP09681 153 aaPredicted RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 P2RY1P47900 373 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 EIF2B2P49770 351 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 RRAS2P62070 204 aaPredicted RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 KIAA0141Q14154 515 aaPredicted RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 ZNF600Q6ZNG1 722 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 GPHB5Q86YW7 130 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 TMEM116Q8NCL8 245 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 WFDC9Q8NEX5 89 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 OR9G4Q8NGQ1 327 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 OR2K2Q8NGT1 345 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 THAP6Q8TBB0 222 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 OR10C1Q96KK4 312 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 CCDC140Q96MF4 163 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 DAZ1Q9NQZ3 744 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 ZC4H2Q9NQZ6 224 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 LYRM2Q9NU23 88 aaPredicted RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 SIGLEC8Q9NYZ4 499 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 RCL1Q9Y2P8 373 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 NOTCH1P46531 2555 aa5.97□□□□□ -1.45
LIMCH1-222ENST00000515847 MEGF8Q7Z7M0 2845 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 A0A1W2PS18 150 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 SMCO3A2RU48 225 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 ZFP92A6NM28 416 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 C15orf62A8K5M9 175 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 MPTX1A8MV57 137 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 A8MWP6 167 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 H3BP45 60 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 SAP30O75446 220 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 YIF1AO95070 293 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 OR10J1P30954 320 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 S100A11P31949 105 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 RND2P52198 227 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 SYNJ2BPP57105 145 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 RAP2BP61225 183 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 SELENOTP62341 195 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 DLK1P80370 383 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 DEFA5Q01523 94 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 RAB32Q13637 225 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 ATP6V1FQ16864 119 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 LRRC37A5PQ49AS3 106 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM14EPQ6UXP3 125 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 Q8WTZ3 238 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 PPP1R1CQ8WVI7 109 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM190Q8WZ59 177 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 ACY3Q96HD9 319 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 GRAMD2BQ96HH9 432 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 DUX3Q96PT4 197 aa5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 TECRQ9NZ01 308 aaKnown RBP5.96□□□□□ -1.46
LIMCH1-222ENST00000515847 ZNF320A2RRD8 509 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 K7EMT4 169 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 MPDU1O75352 247 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 DFFBO76075 338 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 IGHV3-23P01764 117 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 SPNP16150 400 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 SULT1A1P50225 295 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 SLURP1P55000 103 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 MFAP2P55001 183 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 YPEL3P61236 119 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 KLF5Q13887 457 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 LAMTOR1Q6IAA8 161 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 OR8G2PQ6IF36 304 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 LCN12Q6JVE5 192 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 PRSS54Q6PEW0 395 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 C19orf35Q6ZS72 473 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 ACOT7LQ6ZUV0 252 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 ZNF546Q86UE3 836 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 BPIFCQ8NFQ6 507 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 METTL26Q96S19 204 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM147Q9BVK8 224 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 ZNF436Q9C0F3 470 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 UQCC1Q9NVA1 299 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 NOTCH3Q9UM47 2321 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 DMRT1Q9Y5R6 373 aa5.95□□□□□ -1.46
LIMCH1-222ENST00000515847 IGHV3-21A0A0B4J1V1 117 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 PPP5D1E7EU14 171 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 MPC2O95563 127 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 TOMM40O96008 361 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 METTL15P1P0C7V9 234 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 IGLC1P0CG04 106 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 SLC38A11Q08AI6 406 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 ZNF266Q14584 549 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 PXDC1Q5TGL8 231 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 SAMD13Q5VXD3 122 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 TEPPQ6URK8 271 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM144Q7Z5S9 345 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 INO80EQ8NBZ0 244 aaPredicted RBP5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 OR51G1Q8NGK1 321 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 DLX4Q92988 240 aaPredicted RBP5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 TRGV9Q99603 122 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 C20orf24Q9BUV8 137 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 NPVFQ9HCQ7 196 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 MRPL27Q9P0M9 148 aaKnown RBP5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 SLC45A2Q9UMX9 530 aa5.94□□□□□ -1.46
LIMCH1-222ENST00000515847 TRAV25A0A0B4J276 109 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 C17orf112F2Z3M2 114 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 OR2C1O95371 312 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 SIX6O95475 246 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM50AO95807 157 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 IFNA5P01569 189 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms