RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 NUPR2A6NF83 97 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 CCDC160A6NGH7 325 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 NXPH3O95157 252 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 IFNA10P01566 189 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 NPY1RP25929 384 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 CRYBB3P26998 211 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 OR10J1P30954 320 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 CCR6P51684 374 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 RND2P52198 227 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 DEFB131AP59861 70 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 SRPXP78539 464 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 PYDC2Q56P42 97 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 LGI3Q8N145 548 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 LILRB2Q8N423 598 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 STXBP6Q8NFX7 210 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 GATAD1Q8WUU5 269 aa10.08□□□□□ -0.8
TCOF1-215ENST00000515516 A0A0B4J2A0 478 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 IGKV1-17P01599 117 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 ATF4P18848 351 aaPredicted RBP10.07□□□□□ -0.8
TCOF1-215ENST00000515516 S100A5P33763 92 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 P2RY1P47900 373 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 SMCO1Q147U7 214 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 LEMD1Q68G75 181 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 PRSS54Q6PEW0 395 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 STHQ8IWL8 128 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 TOMM5Q8N4H5 51 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 RARRES2Q99969 163 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 SOSTQ9BQB4 213 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 PRR13Q9NZ81 148 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 SHPKQ9UHJ6 478 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 KLK5Q9Y337 293 aaPredicted RBP10.07□□□□□ -0.8
TCOF1-215ENST00000515516 U3KQ87 197 aa10.07□□□□□ -0.8
TCOF1-215ENST00000515516 HELTA6NFD8 242 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 CA1P00915 261 aaPredicted RBP10.06□□□□□ -0.8
TCOF1-215ENST00000515516 HNRNPCP07910 306 aaKnown RBP eCLIP10.06□□□□□ -0.8
TCOF1-215ENST00000515516 IGLC1P0CG04 106 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 AP2S1P53680 142 aaPredicted RBP10.06□□□□□ -0.8
TCOF1-215ENST00000515516 YPEL3P61236 119 aaPredicted RBP10.06□□□□□ -0.8
TCOF1-215ENST00000515516 NMSQ5H8A3 153 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 LYZL2Q7Z4W2 148 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 TMED4Q7Z7H5 227 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 OR1S1Q8NH92 325 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 DTD1Q8TEA8 209 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 ACY3Q96HD9 319 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 CSMD3Q7Z407 3707 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 STARD9Q9P2P6 4700 aa10.06□□□□□ -0.8
TCOF1-215ENST00000515516 IFNA4P05014 189 aa10.05□□□□□ -0.8
TCOF1-215ENST00000515516 RD3LP0DJH9 198 aa10.05□□□□□ -0.8
TCOF1-215ENST00000515516 ATP5IP56385 69 aaPredicted RBP10.05□□□□□ -0.8
TCOF1-215ENST00000515516 RBMS2Q15434 407 aaKnown RBP10.05□□□□□ -0.8
TCOF1-215ENST00000515516 CEMP1Q6PRD7 247 aaPredicted RBP10.05□□□□□ -0.8
TCOF1-215ENST00000515516 OR11H2Q8NH07 326 aa10.05□□□□□ -0.8
TCOF1-215ENST00000515516 NPIPB3Q92617 1050 aa10.05□□□□□ -0.8
TCOF1-215ENST00000515516 HSPB7Q9UBY9 170 aa10.05□□□□□ -0.8
TCOF1-215ENST00000515516 K7EQG2 157 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 IL4P05112 153 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 SUPT4H1P63272 117 aaKnown RBP10.04□□□□□ -0.8
TCOF1-215ENST00000515516 DHRS2Q13268 280 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 KLF9Q13886 244 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-215ENST00000515516 FAM24BQ8N5W8 94 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 RBKSQ9H477 322 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 PFDN2Q9UHV9 154 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 SACSQ9NZJ4 4579 aa10.04□□□□□ -0.8
TCOF1-215ENST00000515516 LYSTQ99698 3801 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 RYR2Q92736 4967 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 DUXBA0A1W2PPF3 345 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 LY6G6CO95867 125 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 TOMM40O96008 361 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 ZNF688P0C7X2 276 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 VAMP1P23763 118 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 EWSR1Q01844 656 aaKnown RBP eCLIP10.03□□□□□ -0.8
TCOF1-215ENST00000515516 TMEM41BQ5BJD5 291 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 TMEM128Q5BJH2 165 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 DEDD2Q8WXF8 326 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 SLC25A21Q9BQT8 299 aaPredicted RBP10.03□□□□□ -0.8
TCOF1-215ENST00000515516 MFFQ9GZY8 342 aa10.03□□□□□ -0.8
TCOF1-215ENST00000515516 FABP1P07148 127 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 SPP1P10451 314 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 GPX4P36969 197 aaPredicted RBP10.02□□□□□ -0.81
TCOF1-215ENST00000515516 NUP62P37198 522 aaPredicted RBP10.02□□□□□ -0.81
TCOF1-215ENST00000515516 INPP1P49441 399 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 RAB11AP62491 216 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 MORN3Q6PF18 240 aaPredicted RBP10.02□□□□□ -0.81
TCOF1-215ENST00000515516 C16orf54Q6UWD8 224 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 C11orf45Q8TAV5 145 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 TMEM170AQ8WVE7 144 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 SLC35E1Q96K37 410 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 PAIP2BQ9ULR5 123 aaKnown RBP10.02□□□□□ -0.81
TCOF1-215ENST00000515516 U3KQE9 123 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 DNAH1Q9P2D7 4330 aa10.02□□□□□ -0.81
TCOF1-215ENST00000515516 ZFP92A6NM28 416 aa10.01□□□□□ -0.81
TCOF1-215ENST00000515516 MED6O75586 246 aa10.01□□□□□ -0.81
TCOF1-215ENST00000515516 PSG1P11464 419 aa10.01□□□□□ -0.81
TCOF1-215ENST00000515516 SNRPD3P62318 126 aaKnown RBP10.01□□□□□ -0.81
TCOF1-215ENST00000515516 RPP30P78346 268 aaKnown RBP10.01□□□□□ -0.81
TCOF1-215ENST00000515516 USF2Q15853 346 aaPredicted RBP10.01□□□□□ -0.81
TCOF1-215ENST00000515516 ACTL10Q5JWF8 245 aa10.01□□□□□ -0.81
TCOF1-215ENST00000515516 SPANXN2Q5MJ10 180 aa10.01□□□□□ -0.81
TCOF1-215ENST00000515516 OR51G1Q8NGK1 321 aa10.01□□□□□ -0.81
TCOF1-215ENST00000515516 PHLDA1Q8WV24 401 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms