RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 TM4SF20Q53R12 229 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 FANCMQ8IYD8 2048 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 SMAD7O15105 426 aaKnown RBP10.88□□□□□ -0.67
TCOF1-213ENST00000514442 PSMB2P49721 201 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 SAMD5Q5TGI4 173 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 LOC107984156A0A0G2JMH3 177 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 HIGD1CA8MV81 97 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 TMEM14EPQ6UXP3 125 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 ARL17AQ8IVW1 177 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 MYOZ3Q8TDC0 251 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 IGHV3OR16-13A0A075B7E8 117 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 IGHV3-74A0A0B4J1X5 117 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 RNFT1Q5M7Z0 435 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 RASL11AQ6T310 242 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 MIR17HGQ75NE6 70 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 WDR83OSQ9Y284 106 aa10.88□□□□□ -0.67
TCOF1-213ENST00000514442 STAG3L3P0CL85 134 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 MFAP4P55083 255 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 RPS20P60866 119 aaKnown RBP10.87□□□□□ -0.67
TCOF1-213ENST00000514442 TMEM30BQ3MIR4 351 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 MYO7BQ6PIF6 2116 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 Q6ZVH6 145 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 C1orf147Q96MC9 270 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-213ENST00000514442 HELZP42694 1942 aaKnown RBP10.87□□□□□ -0.67
TCOF1-213ENST00000514442 PHF3Q92576 2039 aaKnown RBP10.87□□□□□ -0.67
TCOF1-213ENST00000514442 FOXH1O75593 365 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 MGPP08493 103 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 C5orf24Q7Z6I8 188 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 IGKV1D-33P01593 117 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 IGKV1-33P01594 117 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 YPEL4Q96NS1 127 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 NAA38Q9BRA0 125 aaKnown RBP10.87□□□□□ -0.67
TCOF1-213ENST00000514442 SAA2-SAA4A0A096LPE2 208 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 TM4SF5O14894 197 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 SAA2P0DJI9 122 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-213ENST00000514442 ZNF497Q6ZNH5 498 aa10.87□□□□□ -0.67
TCOF1-213ENST00000514442 RBPMS2Q6ZRY4 209 aaKnown RBP10.86□□□□□ -0.67
TCOF1-213ENST00000514442 C16orf92Q96LL3 132 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 NPIPB11E5RHQ5 1161 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 RAMP3O60896 148 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 METTL26Q96S19 204 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 SEPSECSQ9HD40 501 aaKnown RBP10.86□□□□□ -0.67
TCOF1-213ENST00000514442 AKAP6Q13023 2319 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 INTS1Q8N201 2190 aaKnown RBP10.86□□□□□ -0.67
TCOF1-213ENST00000514442 IGLC7A0M8Q6 106 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 TMEM50AO95807 157 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 IGHV1-46P01743 117 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 TDRG1Q3Y452 100 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 ANAPC13Q9BS18 74 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 PLSCR4Q9NRQ2 329 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 LINC00312Q9Y6C7 94 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 VCX2Q9H322 139 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 RPP21Q9H633 154 aaKnown RBP10.86□□□□□ -0.67
TCOF1-213ENST00000514442 DPM3Q9P2X0 92 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 SELENOKQ9Y6D0 94 aa10.86□□□□□ -0.67
TCOF1-213ENST00000514442 A0A1W2PRE2 83 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 E9PLN8 166 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 SYS1-DBNDD2H3BUS1 97 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 PAX9P55771 341 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 FAM71F2Q6NXP2 309 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 ZNF524Q96C55 264 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 VKORC1Q9BQB6 163 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 FAM231BA6NCW3 169 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 IGFBP2P18065 325 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 CD24P25063 80 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 HOXA4Q00056 320 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-213ENST00000514442 NEU4Q8WWR8 484 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-213ENST00000514442 ZNF581Q9P0T4 197 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 HAX1O00165 279 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 PEX7O00628 323 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 OR9G4Q8NGQ1 327 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 A0A0G2JRQ6 117 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 PPBPP02775 128 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 IL4P05112 153 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 PSMG4Q5JS54 123 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 FAM90A1Q86YD7 464 aa10.85□□□□□ -0.67
TCOF1-213ENST00000514442 OSR1Q8TAX0 266 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-213ENST00000514442 SPTBN1Q01082 2364 aaKnown RBP10.84□□□□□ -0.67
TCOF1-213ENST00000514442 ATP5L2Q7Z4Y8 100 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 PLXNA2O75051 1894 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 FER1L5A0AVI2 2057 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 IGHV3OR16-8A0A075B7F1 116 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 IGHV3-49A0A0A0MS15 119 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 IGKV1-5P01602 117 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 CKS2P33552 79 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 FAM168AQ92567 244 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 NEUROG1Q92886 237 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 SLC25A33Q9BSK2 321 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 NUPR1O60356 82 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 ID1P41134 155 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 MEF2CQ06413 473 aaPredicted RBP10.84□□□□□ -0.67
TCOF1-213ENST00000514442 KIR3DS1Q14943 382 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 ATP6V0BQ99437 205 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 LIME1Q9H400 295 aa10.84□□□□□ -0.67
TCOF1-213ENST00000514442 IGLL1P15814 213 aa10.83□□□□□ -0.68
TCOF1-213ENST00000514442 GATA2P23769 480 aaPredicted RBP10.83□□□□□ -0.68
TCOF1-213ENST00000514442 EFNB3Q15768 340 aa10.83□□□□□ -0.68
TCOF1-213ENST00000514442 MORN2Q502X0 79 aa10.83□□□□□ -0.68
TCOF1-213ENST00000514442 ATP5G2Q06055 141 aa10.83□□□□□ -0.68
TCOF1-213ENST00000514442 TWIST1Q15672 202 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms