RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 NOXA1Q86UR1 476 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 LGI3Q8N145 548 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 TOMM5Q8N4H5 51 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 GBGT1Q8N5D6 347 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 RNF183Q96D59 192 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 MS4A6AQ9H2W1 248 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 TMEM231Q9H6L2 316 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 IGKV3-7A0A075B6H7 116 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 PIGBOS1A0A0B4J2F0 54 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 A0A1W2PS18 150 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 IGLC1P0CG04 106 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 ANXA3P12429 323 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 S100A5P33763 92 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 YPEL3P61236 119 aaPredicted RBP14.3□□□□□ -0.12
USP40-217ENST00000496298 TIGITQ495A1 244 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 OR1S2Q8NGQ3 325 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 U3KQ87 197 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 U3KQE9 123 aa14.3□□□□□ -0.12
USP40-217ENST00000496298 DUXBA0A1W2PPF3 345 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 CCDC160A6NGH7 325 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 RPL35AP18077 110 aaKnown RBP14.29□□□□□ -0.12
USP40-217ENST00000496298 NPY1RP25929 384 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 RND2P52198 227 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 ZNF124Q15973 351 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 DEFB135Q30KP9 77 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 TMEM128Q5BJH2 165 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 ETFRF1Q6IPR1 90 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 METTL26Q96S19 204 aa14.29□□□□□ -0.12
USP40-217ENST00000496298 SLC25A21Q9BQT8 299 aaPredicted RBP14.29□□□□□ -0.12
USP40-217ENST00000496298 IGHV3-66A0A0C4DH42 116 aa14.28□□□□□ -0.12
USP40-217ENST00000496298 ATF4P18848 351 aaPredicted RBP14.28□□□□□ -0.12
USP40-217ENST00000496298 ATP5IP56385 69 aaPredicted RBP14.28□□□□□ -0.12
USP40-217ENST00000496298 LRTM2Q8N967 370 aa14.28□□□□□ -0.12
USP40-217ENST00000496298 CSTL1Q9H114 145 aa14.28□□□□□ -0.12
USP40-217ENST00000496298 PITX3O75364 302 aa14.27□□□□□ -0.13
USP40-217ENST00000496298 NXPH3O95157 252 aa14.27□□□□□ -0.13
USP40-217ENST00000496298 OR10J1P30954 320 aa14.27□□□□□ -0.13
USP40-217ENST00000496298 DTD1Q8TEA8 209 aa14.27□□□□□ -0.13
USP40-217ENST00000496298 Q8WTZ3 238 aa14.27□□□□□ -0.13
USP40-217ENST00000496298 RBKSQ9H477 322 aa14.27□□□□□ -0.13
USP40-217ENST00000496298 PLECQ15149 4684 aaKnown RBP14.27□□□□□ -0.13
USP40-217ENST00000496298 DNASE2O00115 360 aaPredicted RBP14.26□□□□□ -0.13
USP40-217ENST00000496298 IFNA10P01566 189 aa14.26□□□□□ -0.13
USP40-217ENST00000496298 P2RY1P47900 373 aa14.26□□□□□ -0.13
USP40-217ENST00000496298 RBMS2Q15434 407 aaKnown RBP14.26□□□□□ -0.13
USP40-217ENST00000496298 TMED4Q7Z7H5 227 aa14.26□□□□□ -0.13
USP40-217ENST00000496298 LYG2Q86SG7 212 aa14.26□□□□□ -0.13
USP40-217ENST00000496298 NPIPB3Q92617 1050 aa14.26□□□□□ -0.13
USP40-217ENST00000496298 HYDINQ4G0P3 5121 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 A0A0J9YWU9 116 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 MPTX1A8MV57 137 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 K7EQG2 157 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 SLC25A6P12236 298 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 RPL11P62913 178 aaKnown RBP14.25□□□□□ -0.13
USP40-217ENST00000496298 FAM24BQ8N5W8 94 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 GRAMD2BQ96HH9 432 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 NARS2Q96I59 477 aaKnown RBP14.25□□□□□ -0.13
USP40-217ENST00000496298 SRRQ9GZT4 340 aa14.25□□□□□ -0.13
USP40-217ENST00000496298 DEFB131AP59861 70 aa14.24□□□□□ -0.13
USP40-217ENST00000496298 EWSR1Q01844 656 aaKnown RBP eCLIP14.24□□□□□ -0.13
USP40-217ENST00000496298 SPANXN2Q5MJ10 180 aa14.24□□□□□ -0.13
USP40-217ENST00000496298 C16orf54Q6UWD8 224 aa14.24□□□□□ -0.13
USP40-217ENST00000496298 OR1S1Q8NH92 325 aa14.24□□□□□ -0.13
USP40-217ENST00000496298 DCANP1Q8TF63 244 aa14.24□□□□□ -0.13
USP40-217ENST00000496298 GATAD1Q8WUU5 269 aa14.24□□□□□ -0.13
USP40-217ENST00000496298 AGRNO00468 2067 aa14.23□□□□□ -0.13
USP40-217ENST00000496298 TOMM40O96008 361 aa14.23□□□□□ -0.13
USP40-217ENST00000496298 HNRNPCP07910 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
USP40-217ENST00000496298 GPX4P36969 197 aaPredicted RBP14.23□□□□□ -0.13
USP40-217ENST00000496298 GLMPQ8WWB7 406 aa14.23□□□□□ -0.13
USP40-217ENST00000496298 ACY3Q96HD9 319 aa14.23□□□□□ -0.13
USP40-217ENST00000496298 RABAC1Q9UI14 185 aa14.23□□□□□ -0.13
USP40-217ENST00000496298 FAM90A26D6RGX4 464 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 SFT2D2O95562 160 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 RD3LP0DJH9 198 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 VAMP1P23763 118 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 PPP1R1AQ13522 171 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 USF2Q15853 346 aaPredicted RBP14.22□□□□□ -0.13
USP40-217ENST00000496298 STXBP6Q8NFX7 210 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 TMED3Q9Y3Q3 217 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 ALMS1Q8TCU4 4167 aa14.22□□□□□ -0.13
USP40-217ENST00000496298 HELTA6NFD8 242 aa14.21□□□□□ -0.13
USP40-217ENST00000496298 JTBO76095 146 aa14.21□□□□□ -0.13
USP40-217ENST00000496298 IL4P05112 153 aa14.21□□□□□ -0.13
USP40-217ENST00000496298 PSG1P11464 419 aa14.21□□□□□ -0.13
USP40-217ENST00000496298 AP2S1P53680 142 aaPredicted RBP14.21□□□□□ -0.13
USP40-217ENST00000496298 UBE2MP61081 183 aaKnown RBP14.21□□□□□ -0.13
USP40-217ENST00000496298 LEMD1Q68G75 181 aa14.21□□□□□ -0.13
USP40-217ENST00000496298 CENPSQ8N2Z9 138 aa14.21□□□□□ -0.13
USP40-217ENST00000496298 BUB3O43684 328 aa14.2□□□□□ -0.14
USP40-217ENST00000496298 IFNA4P05014 189 aa14.2□□□□□ -0.14
USP40-217ENST00000496298 EIF2B2P49770 351 aaKnown RBP14.2□□□□□ -0.14
USP40-217ENST00000496298 GAMTQ14353 236 aa14.2□□□□□ -0.14
USP40-217ENST00000496298 BAK1Q16611 211 aa14.2□□□□□ -0.14
USP40-217ENST00000496298 IGKV1D-37A0A075B6S9 117 aa14.19□□□□□ -0.14
USP40-217ENST00000496298 NAP1L6A6NFF2 107 aa14.19□□□□□ -0.14
USP40-217ENST00000496298 TRPT1Q86TN4 253 aaKnown RBP14.19□□□□□ -0.14
USP40-217ENST00000496298 TMEM217Q8N7C4 229 aa14.19□□□□□ -0.14
USP40-217ENST00000496298 RARRES2Q99969 163 aa14.19□□□□□ -0.14
USP40-217ENST00000496298 SEPSECSQ9HD40 501 aaKnown RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms