RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 DEDD2Q8WXF8 326 aa13.62□□□□□ -0.23
PRPF40A-209ENST00000486100 TMEM231Q9H6L2 316 aa13.62□□□□□ -0.23
PRPF40A-209ENST00000486100 RYR2Q92736 4967 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 CSMD3Q7Z407 3707 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 PIGBOS1A0A0B4J2F0 54 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 SPRY2O43597 315 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 RPL35AP18077 110 aaKnown RBP13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 CRYBB3P26998 211 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 TNFRSF9Q07011 255 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 TMEM128Q5BJH2 165 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 ETFRF1Q6IPR1 90 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 METTL26Q96S19 204 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 MS4A6AQ9H2W1 248 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 MAP6D1Q9H9H5 199 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 HSPB7Q9UBY9 170 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 U3KQ87 197 aa13.61□□□□□ -0.23
PRPF40A-209ENST00000486100 TRAV2A0A0B4J234 112 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 LCE6AA0A183 80 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 DNASE2O00115 360 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 IGLC1P0CG04 106 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 NPY1RP25929 384 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 RND2P52198 227 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 RPL11P62913 178 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 TMED4Q7Z7H5 227 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 OR1S2Q8NGQ3 325 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 Q8WTZ3 238 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 SLC25A21Q9BQT8 299 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 TENM2Q9NT68 2774 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 SACSQ9NZJ4 4579 aa13.6□□□□□ -0.23
PRPF40A-209ENST00000486100 DUXBA0A1W2PPF3 345 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 IFNA10P01566 189 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 YPEL3P61236 119 aaPredicted RBP13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 ZNF124Q15973 351 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 DEFB135Q30KP9 77 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 DTD1Q8TEA8 209 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 RNF183Q96D59 192 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 RBKSQ9H477 322 aa13.59□□□□□ -0.23
PRPF40A-209ENST00000486100 OR10J1P30954 320 aa13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 ATP5IP56385 69 aaPredicted RBP13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 SPANXN2Q5MJ10 180 aa13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 OR1S1Q8NH92 325 aa13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 NPIPB3Q92617 1050 aa13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 NARS2Q96I59 477 aaKnown RBP13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 CSTL1Q9H114 145 aa13.58□□□□□ -0.24
PRPF40A-209ENST00000486100 RBMS2Q15434 407 aaKnown RBP13.57□□□□□ -0.24
PRPF40A-209ENST00000486100 LRTM2Q8N967 370 aa13.57□□□□□ -0.24
PRPF40A-209ENST00000486100 U3KQE9 123 aa13.57□□□□□ -0.24
PRPF40A-209ENST00000486100 PITX3O75364 302 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 VAMP1P23763 118 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 P2RY1P47900 373 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 DEFB131AP59861 70 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 GRAMD2BQ96HH9 432 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 SRRQ9GZT4 340 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 RABAC1Q9UI14 185 aa13.56□□□□□ -0.24
PRPF40A-209ENST00000486100 A0A0J9YWU9 116 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 MPTX1A8MV57 137 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 SFT2D2O95562 160 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 HNRNPCP07910 306 aaKnown RBP eCLIP13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 SLC25A6P12236 298 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 LINC00299Q6ZSB3 139 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 LYG2Q86SG7 212 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 FAM24BQ8N5W8 94 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 ACY3Q96HD9 319 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 PTTG2Q9NZH5 202 aa13.55□□□□□ -0.24
PRPF40A-209ENST00000486100 K7EQG2 157 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 TOMM40O96008 361 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 IFNA4P05014 189 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 RD3LP0DJH9 198 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 GPX4P36969 197 aaPredicted RBP13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 PPP1R1AQ13522 171 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 CENPSQ8N2Z9 138 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 STXBP6Q8NFX7 210 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 TMED3Q9Y3Q3 217 aa13.54□□□□□ -0.24
PRPF40A-209ENST00000486100 IL4P05112 153 aa13.53□□□□□ -0.24
PRPF40A-209ENST00000486100 BAK1Q16611 211 aa13.53□□□□□ -0.24
PRPF40A-209ENST00000486100 CNPY1Q3B7I2 92 aa13.53□□□□□ -0.24
PRPF40A-209ENST00000486100 LEMD1Q68G75 181 aa13.53□□□□□ -0.24
PRPF40A-209ENST00000486100 C16orf54Q6UWD8 224 aa13.53□□□□□ -0.24
PRPF40A-209ENST00000486100 LYSTQ99698 3801 aa13.53□□□□□ -0.24
PRPF40A-209ENST00000486100 HELTA6NFD8 242 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 NAP1L6A6NFF2 107 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 FAM90A26D6RGX4 464 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 PSG1P11464 419 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 ATF4P18848 351 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 INPP1P49441 399 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 EIF2B2P49770 351 aaKnown RBP13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 AP2S1P53680 142 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 USF2Q15853 346 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 DCANP1Q8TF63 244 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 GATAD1Q8WUU5 269 aa13.52□□□□□ -0.25
PRPF40A-209ENST00000486100 MED6O75586 246 aa13.51□□□□□ -0.25
PRPF40A-209ENST00000486100 UBE2MP61081 183 aaKnown RBP13.51□□□□□ -0.25
PRPF40A-209ENST00000486100 EWSR1Q01844 656 aaKnown RBP eCLIP13.51□□□□□ -0.25
PRPF40A-209ENST00000486100 GAMTQ14353 236 aa13.51□□□□□ -0.25
PRPF40A-209ENST00000486100 TRIQKQ629K1 86 aa13.51□□□□□ -0.25
PRPF40A-209ENST00000486100 GLMPQ8WWB7 406 aa13.51□□□□□ -0.25
PRPF40A-209ENST00000486100 JTBO76095 146 aa13.5□□□□□ -0.25
PRPF40A-209ENST00000486100 HOXB5P09067 269 aa13.5□□□□□ -0.25
PRPF40A-209ENST00000486100 IAPPP10997 89 aa13.5□□□□□ -0.25
PRPF40A-209ENST00000486100 RAB11AP62491 216 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms