RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 LCNL1Q6ZST4 164 aa13.17□□□□□ -0.3
VIM-205ENST00000485947 C18orf65Q6ZTR6 163 aa13.17□□□□□ -0.3
VIM-205ENST00000485947 ZNF491Q8N8L2 437 aa13.17□□□□□ -0.3
VIM-205ENST00000485947 THYN1Q9P016 225 aa13.17□□□□□ -0.3
VIM-205ENST00000485947 IGLV11-55A0A075B6I3 123 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 G3V318 75 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 H3BUA1 57 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 MPDU1O75352 247 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 PRB2P02812 416 aaPredicted RBP13.16□□□□□ -0.3
VIM-205ENST00000485947 OPRK1P41145 380 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 KIAA0141Q14154 515 aaPredicted RBP13.16□□□□□ -0.3
VIM-205ENST00000485947 EIF5AL1Q6IS14 154 aaKnown RBP13.16□□□□□ -0.3
VIM-205ENST00000485947 SLC16A13Q7RTY0 426 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 MISP3Q96FF7 219 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 SLC35E1Q96K37 410 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 GINS3Q9BRX5 216 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 WDR61Q9GZS3 305 aaKnown RBP13.16□□□□□ -0.3
VIM-205ENST00000485947 NPVFQ9HCQ7 196 aa13.16□□□□□ -0.3
VIM-205ENST00000485947 UBE2L5PA0A1B0GUS4 154 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 BRI3O95415 125 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 INSL3P51460 131 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 C9orf66Q5T8R8 295 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 TEX261Q6UWH6 196 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 SCGB1C1Q8TD33 95 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 GNPNAT1Q96EK6 184 aaPredicted RBP13.15□□□□□ -0.3
VIM-205ENST00000485947 WDR83OSQ9Y284 106 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 DMRT1Q9Y5R6 373 aa13.15□□□□□ -0.3
VIM-205ENST00000485947 SMCO3A2RU48 225 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 I3L521 148 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 IFNA7P01567 189 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 IFITM2Q01629 132 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 C19orf35Q6ZS72 473 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 ZNF767PQ75MW2 155 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 TMEM144Q7Z5S9 345 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 OR5T1Q8NG75 326 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 OR11H1Q8NG94 326 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 FANCD2OSQ96PS1 177 aa13.14□□□□□ -0.31
VIM-205ENST00000485947 FNDC4Q9H6D8 234 aaPredicted RBP13.14□□□□□ -0.31
VIM-205ENST00000485947 I3L2K1 104 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 MT-CO2P00403 227 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 SEC11BP0C7V7 166 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 AKR1C1Q04828 323 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 ZNF616Q08AN1 781 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 GAMTQ14353 236 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 HSD17B11Q8NBQ5 300 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 PSMG3Q9BT73 122 aaPredicted RBP13.13□□□□□ -0.31
VIM-205ENST00000485947 KLK15Q9H2R5 256 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 TIMM9Q9Y5J7 89 aa13.13□□□□□ -0.31
VIM-205ENST00000485947 TRBV9A0A0B4J1U6 114 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 C17orf112F2Z3M2 114 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 K7EIM0 57 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 RGS13O14921 159 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 SOX15O60248 233 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 CFDP00746 253 aaPredicted RBP13.12□□□□□ -0.31
VIM-205ENST00000485947 SPP1P10451 314 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 FGF7P21781 194 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 ATP6V0CP27449 155 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 KRTAP10-11P60412 298 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 DEFB136Q30KP8 78 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 TEPPQ6URK8 271 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 BTNL8Q6UX41 500 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 TMEM116Q8NCL8 245 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 ZNF680Q8NEM1 530 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 OR1N2Q8NGR9 330 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 SCARB1Q8WTV0 552 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 KCNIP2Q9NS61 270 aa13.12□□□□□ -0.31
VIM-205ENST00000485947 LSM4Q9Y4Z0 139 aaKnown RBP13.12□□□□□ -0.31
VIM-205ENST00000485947 K7EIL1 84 aa13.11□□□□□ -0.31
VIM-205ENST00000485947 RAB31Q13636 194 aa13.11□□□□□ -0.31
VIM-205ENST00000485947 VN1R17PQ8TDU5 208 aa13.11□□□□□ -0.31
VIM-205ENST00000485947 DUX3Q96PT4 197 aa13.11□□□□□ -0.31
VIM-205ENST00000485947 ZNF355PQ9NSJ1 428 aa13.11□□□□□ -0.31
VIM-205ENST00000485947 UBQLN2Q9UHD9 624 aa13.11□□□□□ -0.31
VIM-205ENST00000485947 FAM223BA6NKX1 122 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 PRH1P02810 166 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 LGALS1P09382 135 aaKnown RBP13.1□□□□□ -0.31
VIM-205ENST00000485947 HOXD3P31249 432 aaPredicted RBP13.1□□□□□ -0.31
VIM-205ENST00000485947 RND2P52198 227 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 MLANAQ16655 118 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 FAM223AQ8IWN6 122 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 ZNF709Q8N972 641 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 THAP8Q8NA92 274 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 NECAP1Q8NC96 275 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 OR4X1Q8NH49 305 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 CXorf58Q96LI9 332 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 NPCDR1Q9BY65 106 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 GNB4Q9HAV0 340 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 FBXL7Q9UJT9 491 aa13.1□□□□□ -0.31
VIM-205ENST00000485947 A0A0G2JLM5 398 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 SEC14L6B5MCN3 397 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 OR2J3O76001 311 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 MFAP4P55083 255 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 SERF2P84101 59 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 ACSM6Q6P461 480 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 ALKAL2Q6UX46 152 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 OR2G3Q8NGZ4 309 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 TMED6Q8WW62 240 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 NPIPB3Q92617 1050 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 ACY3Q96HD9 319 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 ATP6V0BQ99437 205 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms