RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 YPEL3P61236 119 aaPredicted RBP17.33■□□□□ 0.36
C9orf3-215ENST00000478473 SPANXN2Q5MJ10 180 aa17.33■□□□□ 0.36
C9orf3-215ENST00000478473 ETFRF1Q6IPR1 90 aa17.33■□□□□ 0.36
C9orf3-215ENST00000478473 OR1S2Q8NGQ3 325 aa17.33■□□□□ 0.36
C9orf3-215ENST00000478473 TMEM231Q9H6L2 316 aa17.33■□□□□ 0.36
C9orf3-215ENST00000478473 U3KQE9 123 aa17.33■□□□□ 0.36
C9orf3-215ENST00000478473 TENM2Q9NT68 2774 aa17.32■□□□□ 0.36
C9orf3-215ENST00000478473 A0A1W2PS18 150 aa17.32■□□□□ 0.36
C9orf3-215ENST00000478473 NPPCP23582 126 aa17.32■□□□□ 0.36
C9orf3-215ENST00000478473 IGHV3OR16-13A0A075B7E8 117 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 IGHV3-74A0A0B4J1X5 117 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 RND2P52198 227 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 PAFAH1B2P68402 229 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 DTD1Q8TEA8 209 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 METTL26Q96S19 204 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 MAP6D1Q9H9H5 199 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 SACSQ9NZJ4 4579 aa17.31■□□□□ 0.36
C9orf3-215ENST00000478473 DFFBO76075 338 aa17.3■□□□□ 0.36
C9orf3-215ENST00000478473 TIGITQ495A1 244 aa17.3■□□□□ 0.36
C9orf3-215ENST00000478473 ZFAND6Q6FIF0 208 aa17.3■□□□□ 0.36
C9orf3-215ENST00000478473 TMED4Q7Z7H5 227 aa17.3■□□□□ 0.36
C9orf3-215ENST00000478473 RBKSQ9H477 322 aa17.3■□□□□ 0.36
C9orf3-215ENST00000478473 FAM90A26D6RGX4 464 aa17.29■□□□□ 0.36
C9orf3-215ENST00000478473 NXPH3O95157 252 aa17.29■□□□□ 0.36
C9orf3-215ENST00000478473 UBE2MP61081 183 aaKnown RBP17.29■□□□□ 0.36
C9orf3-215ENST00000478473 RBMS2Q15434 407 aaKnown RBP17.29■□□□□ 0.36
C9orf3-215ENST00000478473 MS4A6AQ9H2W1 248 aa17.29■□□□□ 0.36
C9orf3-215ENST00000478473 TMED3Q9Y3Q3 217 aa17.29■□□□□ 0.36
C9orf3-215ENST00000478473 NAP1L6A6NFF2 107 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 SFT2D2O95562 160 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 OR10J1P30954 320 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 BAK1Q16611 211 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 APRG1Q8IVJ8 170 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 STPG3Q8N7X2 389 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 RNF183Q96D59 192 aa17.28■□□□□ 0.36
C9orf3-215ENST00000478473 LCE6AA0A183 80 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 SPRY2O43597 315 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 IFNA10P01566 189 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 PPP1R1AQ13522 171 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 CENPSQ8N2Z9 138 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 GBGT1Q8N5D6 347 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 Q8WTZ3 238 aa17.27■□□□□ 0.36
C9orf3-215ENST00000478473 SDHCQ99643 169 aaPredicted RBP17.27■□□□□ 0.36
C9orf3-215ENST00000478473 ATF4P18848 351 aaPredicted RBP17.26■□□□□ 0.35
C9orf3-215ENST00000478473 GPX4P36969 197 aaPredicted RBP17.26■□□□□ 0.35
C9orf3-215ENST00000478473 TFPI2P48307 235 aa17.26■□□□□ 0.35
C9orf3-215ENST00000478473 OR1S1Q8NH92 325 aa17.26■□□□□ 0.35
C9orf3-215ENST00000478473 NPIPB3Q92617 1050 aa17.26■□□□□ 0.35
C9orf3-215ENST00000478473 GRAMD2BQ96HH9 432 aa17.26■□□□□ 0.35
C9orf3-215ENST00000478473 IGKV3-7A0A075B6H7 116 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 IGHV3-66A0A0C4DH42 116 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 K7EQG2 157 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 NDUFB6O95139 128 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 TOMM40O96008 361 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 VAMP1P23763 118 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 P2RY1P47900 373 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 NDUFA13Q9P0J0 144 aa17.25■□□□□ 0.35
C9orf3-215ENST00000478473 ZNF124Q15973 351 aa17.24■□□□□ 0.35
C9orf3-215ENST00000478473 DEFB135Q30KP9 77 aa17.24■□□□□ 0.35
C9orf3-215ENST00000478473 C16orf54Q6UWD8 224 aa17.24■□□□□ 0.35
C9orf3-215ENST00000478473 DCANP1Q8TF63 244 aa17.24■□□□□ 0.35
C9orf3-215ENST00000478473 NARS2Q96I59 477 aaKnown RBP17.24■□□□□ 0.35
C9orf3-215ENST00000478473 CSTL1Q9H114 145 aa17.24■□□□□ 0.35
C9orf3-215ENST00000478473 DNASE2O00115 360 aaPredicted RBP17.23■□□□□ 0.35
C9orf3-215ENST00000478473 HNRNPCP07910 306 aaKnown RBP eCLIP17.23■□□□□ 0.355e-8■■□□□ 13.5
C9orf3-215ENST00000478473 RPL35AP18077 110 aaKnown RBP17.23■□□□□ 0.35
C9orf3-215ENST00000478473 USF2Q15853 346 aaPredicted RBP17.23■□□□□ 0.35
C9orf3-215ENST00000478473 GLMPQ8WWB7 406 aa17.23■□□□□ 0.35
C9orf3-215ENST00000478473 RYR2Q92736 4967 aa17.22■□□□□ 0.35
C9orf3-215ENST00000478473 RD3LP0DJH9 198 aa17.22■□□□□ 0.35
C9orf3-215ENST00000478473 GAMTQ14353 236 aa17.22■□□□□ 0.35
C9orf3-215ENST00000478473 TRIQKQ629K1 86 aa17.22■□□□□ 0.35
C9orf3-215ENST00000478473 FAM24BQ8N5W8 94 aa17.22■□□□□ 0.35
C9orf3-215ENST00000478473 ACY3Q96HD9 319 aa17.22■□□□□ 0.35
C9orf3-215ENST00000478473 C7orf50Q9BRJ6 194 aaKnown RBP17.22■□□□□ 0.35
C9orf3-215ENST00000478473 HELTA6NFD8 242 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 MPTX1A8MV57 137 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 BUB3O43684 328 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 MED6O75586 246 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 IFNA4P05014 189 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 PSG1P11464 419 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 DEFB131AP59861 70 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 GATAD1Q8WUU5 269 aa17.21■□□□□ 0.35
C9orf3-215ENST00000478473 CIB3Q96Q77 187 aaPredicted RBP17.21■□□□□ 0.35
C9orf3-215ENST00000478473 LYSTQ99698 3801 aa17.2■□□□□ 0.34
C9orf3-215ENST00000478473 IGKV1D-37A0A075B6S9 117 aa17.2■□□□□ 0.34
C9orf3-215ENST00000478473 C9orf170A2RU37 121 aa17.2■□□□□ 0.34
C9orf3-215ENST00000478473 IL4P05112 153 aa17.2■□□□□ 0.34
C9orf3-215ENST00000478473 BTCP35070 178 aa17.2■□□□□ 0.34
C9orf3-215ENST00000478473 EIF2B2P49770 351 aaKnown RBP17.2■□□□□ 0.34
C9orf3-215ENST00000478473 AP2S1P53680 142 aaPredicted RBP17.2■□□□□ 0.34
C9orf3-215ENST00000478473 RPL11P62913 178 aaKnown RBP17.2■□□□□ 0.34
C9orf3-215ENST00000478473 GGNBP1Q5YKI7 109 aa17.2■□□□□ 0.34
C9orf3-215ENST00000478473 SEPSECSQ9HD40 501 aaKnown RBP17.2■□□□□ 0.34
C9orf3-215ENST00000478473 SYNGR2O43760 224 aa17.19■□□□□ 0.34
C9orf3-215ENST00000478473 LYG2Q86SG7 212 aa17.19■□□□□ 0.34
C9orf3-215ENST00000478473 OR51G1Q8NGK1 321 aa17.19■□□□□ 0.34
C9orf3-215ENST00000478473 RABAC1Q9UI14 185 aa17.19■□□□□ 0.34
C9orf3-215ENST00000478473 PRSS46E5RG02 174 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 IL7P13232 177 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms