RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 RBMS2Q15434 407 aaKnown RBP13.29□□□□□ -0.28
UPF3A-203ENST00000474056 ZNF124Q15973 351 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 APRG1Q8IVJ8 170 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 LRTM2Q8N967 370 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 OR1S1Q8NH92 325 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 SDHCQ99643 169 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-203ENST00000474056 SFT2D2O95562 160 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 TRIQKQ629K1 86 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 CENPSQ8N2Z9 138 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 OR1S2Q8NGQ3 325 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 LYSTQ99698 3801 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 OVOL2Q9BRP0 275 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 U3KQ87 197 aa13.28□□□□□ -0.28
UPF3A-203ENST00000474056 PITX3O75364 302 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 NPPCP23582 126 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 CRYBB3P26998 211 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 OR10J1P30954 320 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 INPP1P49441 399 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 ETFRF1Q6IPR1 90 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 NOXA1Q86UR1 476 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 WFDC3Q8IUB2 231 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 METTL26Q96S19 204 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 MAP6D1Q9H9H5 199 aa13.27□□□□□ -0.29
UPF3A-203ENST00000474056 PIGBOS1A0A0B4J2F0 54 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 CD5P06127 495 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 RPL35AP18077 110 aaKnown RBP13.26□□□□□ -0.29
UPF3A-203ENST00000474056 APOC4P55056 127 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 PAFAH1B2P68402 229 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 DEFB135Q30KP9 77 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 NPIPB3Q92617 1050 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 ACY3Q96HD9 319 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 MS4A6AQ9H2W1 248 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 TMEM231Q9H6L2 316 aa13.26□□□□□ -0.29
UPF3A-203ENST00000474056 LINC00854A0A1B0GVQ3 168 aa13.25□□□□□ -0.29
UPF3A-203ENST00000474056 A0A1W2PS18 150 aa13.25□□□□□ -0.29
UPF3A-203ENST00000474056 NAP1L6A6NFF2 107 aa13.25□□□□□ -0.29
UPF3A-203ENST00000474056 IAPPP10997 89 aa13.25□□□□□ -0.29
UPF3A-203ENST00000474056 YPEL3P61236 119 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-203ENST00000474056 RPL11P62913 178 aaKnown RBP13.25□□□□□ -0.29
UPF3A-203ENST00000474056 FAM24BQ8N5W8 94 aa13.25□□□□□ -0.29
UPF3A-203ENST00000474056 DNASE2O00115 360 aaPredicted RBP13.24□□□□□ -0.29
UPF3A-203ENST00000474056 NDUFB6O95139 128 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 IFNA4P05014 189 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 HOXB5P09067 269 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 SLC25A6P12236 298 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 BTCP35070 178 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 P2RY1P47900 373 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 Q8WTZ3 238 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 FLVCR2Q9UPI3 526 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 TMED3Q9Y3Q3 217 aa13.24□□□□□ -0.29
UPF3A-203ENST00000474056 PLECQ15149 4684 aaKnown RBP13.23□□□□□ -0.29
UPF3A-203ENST00000474056 TENM2Q9NT68 2774 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 KIR2DL5BA0A0G2JN68 375 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 KIR2DL5BA0A0G2JPC4 375 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 IL4P05112 153 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 CMC4P56277 68 aaPredicted RBP13.23□□□□□ -0.29
UPF3A-203ENST00000474056 UBE2MP61081 183 aaKnown RBP13.23□□□□□ -0.29
UPF3A-203ENST00000474056 USF2Q15853 346 aaPredicted RBP13.23□□□□□ -0.29
UPF3A-203ENST00000474056 GGNBP1Q5YKI7 109 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 Q6ZWC4 215 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 KIR2DL5AQ8N109 375 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 KIR2DL5BQ8NHK3 375 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 RABAC1Q9UI14 185 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 U3KQE9 123 aa13.23□□□□□ -0.29
UPF3A-203ENST00000474056 TRAV2A0A0B4J234 112 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 C9orf170A2RU37 121 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 FAM90A26D6RGX4 464 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 UBE2CO00762 179 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 SPRY2O43597 315 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 TOMM40O96008 361 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 HNRNPCP07910 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
UPF3A-203ENST00000474056 IL7P13232 177 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 DEFB131AP59861 70 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 LEMD1Q68G75 181 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 STPG3Q8N7X2 389 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 STXBP6Q8NFX7 210 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 NARS2Q96I59 477 aaKnown RBP13.22□□□□□ -0.29
UPF3A-203ENST00000474056 MAGT1Q9H0U3 335 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 NDUFA13Q9P0J0 144 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 TP53TG1Q9Y2A0 90 aa13.22□□□□□ -0.29
UPF3A-203ENST00000474056 GAMTQ14353 236 aa13.21□□□□□ -0.29
UPF3A-203ENST00000474056 C7orf50Q9BRJ6 194 aaKnown RBP13.21□□□□□ -0.29
UPF3A-203ENST00000474056 IGKV1D-37A0A075B6S9 117 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 K7EQG2 157 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 MED6O75586 246 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 ADAP1O75689 374 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 RD3LP0DJH9 198 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 PSG1P11464 419 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 GPX4P36969 197 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-203ENST00000474056 ATP5IP56385 69 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-203ENST00000474056 DHRS2Q13268 280 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 C16orf54Q6UWD8 224 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 GLMPQ8WWB7 406 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 RNF183Q96D59 192 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 GRAMD2BQ96HH9 432 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 SLC35E1Q96K37 410 aa13.2□□□□□ -0.3
UPF3A-203ENST00000474056 PAIP2BQ9ULR5 123 aaKnown RBP13.2□□□□□ -0.3
UPF3A-203ENST00000474056 HYDINQ4G0P3 5121 aa13.19□□□□□ -0.3
UPF3A-203ENST00000474056 CENPXA8MT69 81 aa13.19□□□□□ -0.3
UPF3A-203ENST00000474056 MPTX1A8MV57 137 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms