RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 KIR2DL5BQ8NHK3 375 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 IL17DQ8TAD2 202 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 DTD1Q8TEA8 209 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 ST8SIA2Q92186 375 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 METTL26Q96S19 204 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 RBKSQ9H477 322 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 TMEM231Q9H6L2 316 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 STARD9Q9P2P6 4700 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 DYNC2H1Q8NCM8 4307 aaKnown RBP8.86□□□□□ -0.99
SYNE1-221ENST00000472563 TRAV2A0A0B4J234 112 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 A0A1W2PS18 150 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 NAP1L6A6NFF2 107 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 PITX3O75364 302 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 DFFBO76075 338 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 SFT2D2O95562 160 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 SLC25A6P12236 298 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 VAMP1P23763 118 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 CRYBB3P26998 211 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 OR10J1P30954 320 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 TFPI2P48307 235 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 ZFAND6Q6FIF0 208 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 Q6ZWC4 215 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 GBGT1Q8N5D6 347 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 OR1S1Q8NH92 325 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 Q8WTZ3 238 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 OVOL2Q9BRP0 275 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 TP53TG1Q9Y2A0 90 aa8.86□□□□□ -0.99
SYNE1-221ENST00000472563 IGKV3-7A0A075B6H7 116 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 IGHV3-66A0A0C4DH42 116 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 FAM90A26D6RGX4 464 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 INPP1P49441 399 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 UBE2MP61081 183 aaKnown RBP8.85□□□□□ -0.99
SYNE1-221ENST00000472563 PPP1R1AQ13522 171 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 RBMS2Q15434 407 aaKnown RBP8.85□□□□□ -0.99
SYNE1-221ENST00000472563 BAK1Q16611 211 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 TRIQKQ629K1 86 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 WFDC3Q8IUB2 231 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 APRG1Q8IVJ8 170 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 CENPSQ8N2Z9 138 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 STPG3Q8N7X2 389 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 NPIPB3Q92617 1050 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 MS4A6AQ9H2W1 248 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 MAP6D1Q9H9H5 199 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 NDUFA13Q9P0J0 144 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 TMED3Q9Y3Q3 217 aa8.85□□□□□ -0.99
SYNE1-221ENST00000472563 DNASE2O00115 360 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-221ENST00000472563 GPX4P36969 197 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-221ENST00000472563 RPL11P62913 178 aaKnown RBP8.84□□□□□ -0.99
SYNE1-221ENST00000472563 ACY3Q96HD9 319 aa8.84□□□□□ -0.99
SYNE1-221ENST00000472563 GRAMD2BQ96HH9 432 aa8.84□□□□□ -0.99
SYNE1-221ENST00000472563 NARS2Q96I59 477 aaKnown RBP8.84□□□□□ -0.99
SYNE1-221ENST00000472563 U3KQE9 123 aa8.84□□□□□ -0.99
SYNE1-221ENST00000472563 SPRY2O43597 315 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 NDUFB6O95139 128 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 IFNA4P05014 189 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 RD3LP0DJH9 198 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 RPL35AP18077 110 aaKnown RBP8.83□□□□□ -1
SYNE1-221ENST00000472563 P2RY1P47900 373 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 RNF183Q96D59 192 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 SDHCQ99643 169 aaPredicted RBP8.83□□□□□ -1
SYNE1-221ENST00000472563 SACSQ9NZJ4 4579 aa8.83□□□□□ -1
SYNE1-221ENST00000472563 TENM2Q9NT68 2774 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 CENPXA8MT69 81 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 MED6O75586 246 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 TOMM40O96008 361 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 IL4P05112 153 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 HNRNPCP07910 306 aaKnown RBP eCLIP8.82□□□□□ -1
SYNE1-221ENST00000472563 ZNF124Q15973 351 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 DEFB135Q30KP9 77 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 CIB3Q96Q77 187 aaPredicted RBP8.82□□□□□ -1
SYNE1-221ENST00000472563 C7orf50Q9BRJ6 194 aaKnown RBP8.82□□□□□ -1
SYNE1-221ENST00000472563 CSTL1Q9H114 145 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 RABAC1Q9UI14 185 aa8.82□□□□□ -1
SYNE1-221ENST00000472563 LCE6AA0A183 80 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 C9orf170A2RU37 121 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 HELTA6NFD8 242 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 MPTX1A8MV57 137 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 K7EQG2 157 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 SYNGR2O43760 224 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 HOXB5P09067 269 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 PSG1P11464 419 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 IL7P13232 177 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 EIF2B2P49770 351 aaKnown RBP8.81□□□□□ -1
SYNE1-221ENST00000472563 AP2S1P53680 142 aaPredicted RBP8.81□□□□□ -1
SYNE1-221ENST00000472563 DEFB131AP59861 70 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 RPP30P78346 268 aaKnown RBP8.81□□□□□ -1
SYNE1-221ENST00000472563 GAMTQ14353 236 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 USF2Q15853 346 aaPredicted RBP8.81□□□□□ -1
SYNE1-221ENST00000472563 GGNBP1Q5YKI7 109 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 C16orf54Q6UWD8 224 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 FAM24BQ8N5W8 94 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 STXBP6Q8NFX7 210 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 SLC35E1Q96K37 410 aa8.81□□□□□ -1
SYNE1-221ENST00000472563 LINC00854A0A1B0GVQ3 168 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 IAPPP10997 89 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 BTCP35070 178 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 RAB11AP62491 216 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 OR51G1Q8NGK1 321 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 COQ8AQ8NI60 647 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 DCANP1Q8TF63 244 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms