RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SMIM21Q3B7S5 101 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 TM4SF20Q53R12 229 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 RUSC1-AS1Q66K80 236 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 NCOR1O75376 2440 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 CSMD1Q96PZ7 3565 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 ZDBF2Q9HCK1 2354 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 TRAV8-1A0A0A6YYK1 113 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 IGHV3-21A0A0B4J1V1 117 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 ZNF207O43670 478 aaKnown RBP9.49□□□□□ -0.89
CPSF3-202ENST00000460593 SLC25A5P05141 298 aaKnown RBP9.49□□□□□ -0.89
CPSF3-202ENST00000460593 HBBP68871 147 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 C10orf55Q5SWW7 151 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 FAM71F2Q6NXP2 309 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 PRSS57Q6UWY2 283 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 PATE2Q6UY27 113 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 OR2Z1Q8NG97 314 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 MRPL36Q9P0J6 103 aaKnown RBP9.49□□□□□ -0.89
CPSF3-202ENST00000460593 B4GALT7Q9UBV7 327 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 MOSP00540 346 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 APELAP0DMC3 54 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 MRPL49Q13405 166 aaKnown RBP9.49□□□□□ -0.89
CPSF3-202ENST00000460593 CXXC4Q9H2H0 198 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 PEF1Q9UBV8 284 aaKnown RBP9.49□□□□□ -0.89
CPSF3-202ENST00000460593 FOXA2Q9Y261 457 aaPredicted RBP9.49□□□□□ -0.89
CPSF3-202ENST00000460593 KALRNO60229 2985 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 COX7A2P2O60397 106 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 FAM106CPP0CH98 169 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 HTR1DP28221 377 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 FAM106AQ4KMX7 169 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 TMEM177Q53S58 311 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 ABHD17BQ5VST6 288 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 DEFB108BQ8NET1 73 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 OR1N2Q8NGR9 330 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 C7orf69Q9H7B7 122 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 ZNF430Q9H8G1 570 aaPredicted RBP9.48□□□□□ -0.89
CPSF3-202ENST00000460593 CALYQ9NYX4 217 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 TEX50A0A1B0GTY4 177 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 FAM90A9PA6NNJ1 464 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 MAP1LC3CQ9BXW4 147 aa9.48□□□□□ -0.89
CPSF3-202ENST00000460593 PGPA6NDG6 321 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 CRXO43186 299 aaPredicted RBP9.47□□□□□ -0.89
CPSF3-202ENST00000460593 TNFSF15O95150 251 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 HIST1H1EP10412 219 aaKnown RBP9.47□□□□□ -0.89
CPSF3-202ENST00000460593 ORM2P19652 201 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 ACP1P24666 158 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 REG1BP48304 166 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 NPIPB3Q92617 1050 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 JPT1Q9UK76 154 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.47□□□□□ -0.89
CPSF3-202ENST00000460593 K7ESF4 209 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 CYC1P08574 325 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 RNASE2P10153 161 aaKnown RBP9.47□□□□□ -0.89
CPSF3-202ENST00000460593 MEOX1P50221 254 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 HIST1H1AQ02539 215 aaPredicted RBP9.47□□□□□ -0.89
CPSF3-202ENST00000460593 CNEP1R1Q8N9A8 125 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 GNG7O60262 68 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 RNFT1Q5M7Z0 435 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 BPIFA4PQ86YQ2 179 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 ABI3Q9P2A4 366 aa9.47□□□□□ -0.89
CPSF3-202ENST00000460593 PLCE1Q9P212 2302 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 DSCAMO60469 2012 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 INTS1Q8N201 2190 aaKnown RBP9.46□□□□□ -0.89
CPSF3-202ENST00000460593 PSMB11A5LHX3 300 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 CHEK1O14757 476 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 CXCL12P48061 93 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 LOXL1Q08397 574 aaPredicted RBP9.46□□□□□ -0.89
CPSF3-202ENST00000460593 RAB30Q15771 203 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 C10orf113Q5VZT2 155 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 FAM231DQ6ZW35 169 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 C5orf17Q8NAS9 161 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 OR8A1Q8NGG7 326 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 PRR7Q8TB68 274 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 FXYD5Q96DB9 178 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 TPPP3Q9BW30 176 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 SPRR3Q9UBC9 169 aa9.46□□□□□ -0.89
CPSF3-202ENST00000460593 DMXL2Q8TDJ6 3036 aa9.46□□□□□ -0.9
CPSF3-202ENST00000460593 FBLL1A6NHQ2 334 aaKnown RBP9.46□□□□□ -0.9
CPSF3-202ENST00000460593 TMEM97Q5BJF2 176 aa9.46□□□□□ -0.9
CPSF3-202ENST00000460593 RASL11AQ6T310 242 aa9.46□□□□□ -0.9
CPSF3-202ENST00000460593 CIARTQ8N365 385 aaPredicted RBP9.46□□□□□ -0.9
CPSF3-202ENST00000460593 H1FXQ92522 213 aaKnown RBP9.46□□□□□ -0.9
CPSF3-202ENST00000460593 FLYWCH2Q96CP2 140 aaKnown RBP9.46□□□□□ -0.9
CPSF3-202ENST00000460593 SMIM12Q96EX1 92 aa9.46□□□□□ -0.9
CPSF3-202ENST00000460593 RPP21Q9H633 154 aaKnown RBP9.46□□□□□ -0.9
CPSF3-202ENST00000460593 RABAC1Q9UI14 185 aa9.46□□□□□ -0.9
CPSF3-202ENST00000460593 LAMA5O15230 3695 aa9.46□□□□□ -0.9
CPSF3-202ENST00000460593 LOC389332A0A1B0GUA5 103 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 K7EMI3 77 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 HLA-DRB1P01911 266 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 SAA1P0DJI8 122 aaPredicted RBP9.45□□□□□ -0.9
CPSF3-202ENST00000460593 PRCDQ00LT1 54 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 CD69Q07108 199 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 MSMPQ1L6U9 139 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 C17orf58Q2M2W7 97 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 WFDC3Q8IUB2 231 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 FNDC10F2Z333 226 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 P01737 135 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 GUSBP1Q15486 140 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 LINC00305Q7Z4B0 112 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 OR4A5Q8NH83 315 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms