RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ANAPC10Q9UM13 185 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 PGPEP1LA6NFU8 196 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 F12P00748 615 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-204ENST00000423058 ZNF708P17019 499 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 IGFBP2P18065 325 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 MCRIP2Q9BUT9 160 aaKnown RBP5.75□□□□□ -1.49
SCN1A-204ENST00000423058 C5orf66Q9H5L9 145 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 IGKV1-8A0A0C4DH67 115 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 FAM90A9PA6NNJ1 464 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 OOSP1A8MZH6 123 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 ITGB1BP1O14713 200 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 UMODP07911 640 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 MGST2Q99735 147 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 TNS1Q9HBL0 1735 aaKnown RBP5.75□□□□□ -1.49
SCN1A-204ENST00000423058 FAM223BA6NKX1 122 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 OR9G9P0C7N8 305 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 CGB7P0DN87 165 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 SLC25A16P16260 332 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 CFHR1Q03591 330 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 LAGE3Q14657 143 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 FAM223AQ8IWN6 122 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 CEP192Q8TEP8 1941 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 CA1P00915 261 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-204ENST00000423058 C6orf226Q5I0X4 101 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 C11orf44Q8N8P7 122 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 CACNA1EQ15878 2313 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 TRGV1A0A0A0MS02 117 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 RND3P61587 244 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 IFITM2Q01629 132 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 RASL10AQ92737 203 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 ELF5Q9UKW6 265 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-204ENST00000423058 CHCHD2Q9Y6H1 151 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-204ENST00000423058 SHANK1Q9Y566 2161 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 TRAV2A0A0B4J234 112 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 ZIC3O60481 467 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 PSG1P11464 419 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 WDYHV1Q96HA8 205 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 ZNF561-AS1K7EIQ3 104 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 ATOH7Q8N100 152 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 TM2D1Q9BX74 207 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 C2orf16Q68DN1 1984 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 THSD7AQ9UPZ6 1657 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-204ENST00000423058 TIMM23O14925 209 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 AMBPP02760 352 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 IRF3Q14653 427 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 MIXL1Q9H2W2 232 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 DMRT1Q9Y5R6 373 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 NRXN2Q9P2S2 1712 aa5.74□□□□□ -1.49
SCN1A-204ENST00000423058 VMO1Q7Z5L0 202 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 TNRC6AQ8NDV7 1962 aaKnown RBP5.73□□□□□ -1.49
SCN1A-204ENST00000423058 TRBV5-7A0A0A0MS05 114 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 CBLN1P23435 193 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 TEX43Q6ZNM6 134 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 RLFQ13129 1914 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 M0R1W7 72 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-204ENST00000423058 CRYBA2P53672 197 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 TMEM144Q7Z5S9 345 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 LINC00477Q96M19 166 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 SAA2-SAA4A0A096LPE2 208 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 SAA2P0DJI9 122 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-204ENST00000423058 FAM216BQ8N7L0 139 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 NKAPP1Q8N9T2 125 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 PLEKHB2Q96CS7 222 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 TMEM126AQ9H061 195 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 WDR90Q96KV7 1748 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 A0A0G2JK05 382 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 MPTX1A8MV57 137 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 NDUFS8O00217 210 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 NAT1P18440 290 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 SRSF4Q08170 494 aaKnown RBP5.73□□□□□ -1.49
SCN1A-204ENST00000423058 UNQ6494/PRO21346Q6UXR6 183 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 LCNL1Q6ZST4 164 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 NIT1Q86X76 327 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 ZNF98A6NK75 572 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 TIMP3P35625 211 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 PSG7Q13046 419 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 RASL11AQ6T310 242 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 NRTNQ99748 197 aa5.73□□□□□ -1.49
SCN1A-204ENST00000423058 C12orf77C9JDV5 145 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 ERG28Q9UKR5 140 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 TANC2Q9HCD6 1990 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 GRIFINA4D1Z8 144 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 CD160O95971 181 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 IGKCP01834 107 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 SMIM10L1P0DMW3 83 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 C5orf30Q96GV9 206 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 SMIM10Q96HG1 83 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 GREB1LQ9C091 1923 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-204ENST00000423058 PLXNB3Q9ULL4 1909 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 PSPNO60542 156 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 PIP4P2Q8N4L2 257 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 C9orf106Q8NAJ2 232 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 REPIN1Q9BWE0 567 aaKnown RBP5.72□□□□□ -1.49
SCN1A-204ENST00000423058 SMPXQ9UHP9 88 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 TNCP24821 2201 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 SCO2A0A1W2PP80 73 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 C22orf46C9J442 243 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 MBNL3Q9NUK0 354 aaKnown RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms