RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TSSC4Q9Y5U2 329 aaPredicted RBP14□□□□□ -0.17
SDC1-203ENST00000403076 ATRQ13535 2644 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 TRAV30A0A087WSZ9 112 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 A0A1W2PRX2 142 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 OR10J1P30954 320 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 FCGR2BP31994 310 aaPredicted RBP13.99□□□□□ -0.17
SDC1-203ENST00000403076 RAB31Q13636 194 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 OPCMLQ14982 345 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 FAM209BQ5JX69 171 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 RPL7L1Q6DKI1 246 aaKnown RBP13.99□□□□□ -0.17
SDC1-203ENST00000403076 BTNL8Q6UX41 500 aa13.99□□□□□ -0.17
SDC1-203ENST00000403076 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.98□□□□□ -0.17
SDC1-203ENST00000403076 NUPL2O15504 423 aaKnown RBP13.98□□□□□ -0.17
SDC1-203ENST00000403076 LGALS1P09382 135 aaKnown RBP13.98□□□□□ -0.17
SDC1-203ENST00000403076 KRTAP10-3P60369 221 aa13.98□□□□□ -0.17
SDC1-203ENST00000403076 KLHL30-AS1Q8NEE0 82 aa13.98□□□□□ -0.17
SDC1-203ENST00000403076 ATP6V0BQ99437 205 aa13.98□□□□□ -0.17
SDC1-203ENST00000403076 PEF1Q9UBV8 284 aaKnown RBP13.98□□□□□ -0.17
SDC1-203ENST00000403076 WDR83OSQ9Y284 106 aa13.98□□□□□ -0.17
SDC1-203ENST00000403076 BOLA1Q9Y3E2 137 aa13.98□□□□□ -0.17
SDC1-203ENST00000403076 PPP5D1E7EU14 171 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 F8W735 103 aaPredicted RBP13.97□□□□□ -0.17
SDC1-203ENST00000403076 TGOLN2O43493 480 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 JTBO76095 146 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 ARL3P36405 182 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 TIGITQ495A1 244 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 C18orf65Q6ZTR6 163 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 THAP8Q8NA92 274 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 WDR61Q9GZS3 305 aaKnown RBP13.97□□□□□ -0.17
SDC1-203ENST00000403076 CYTL1Q9NRR1 136 aa13.97□□□□□ -0.17
SDC1-203ENST00000403076 IGLC1P0CG04 106 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 CAMLGP49069 296 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 SPSB3Q6PJ21 355 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 ZNF709Q8N972 641 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 HSD17B11Q8NBQ5 300 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 C4orf3Q8WVX3 66 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 CHRDL1Q9BU40 450 aa13.96□□□□□ -0.17
SDC1-203ENST00000403076 IGKV1OR2-108A0A075B7D4 117 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 MPDU1O75352 247 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 TRBV12-3P01733 135 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 FABP1P07148 127 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 CTSGP08311 255 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 EIF5AP63241 154 aaKnown RBP13.95□□□□□ -0.18
SDC1-203ENST00000403076 NSUN5P1Q3KNT7 163 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 TRGV9Q99603 122 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 LSM4Q9Y4Z0 139 aaKnown RBP13.95□□□□□ -0.18
SDC1-203ENST00000403076 C17orf112F2Z3M2 114 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 I3L521 148 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 AGPAT2O15120 278 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 ADMP35318 185 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 ZNF90Q03938 601 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 C12orf54Q6X4T0 127 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 CYP2G1PQ6ZSU1 146 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 DPF1Q92782 380 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 MGST2Q99735 147 aa13.95□□□□□ -0.18
SDC1-203ENST00000403076 PARD6GQ9BYG4 376 aaPredicted RBP13.95□□□□□ -0.18
SDC1-203ENST00000403076 IGKV1D-37A0A075B6S9 117 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 IGHV3-35A0A0C4DH35 117 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 GGCTO75223 188 aaKnown RBP13.94□□□□□ -0.18
SDC1-203ENST00000403076 IGKV1-17P01599 117 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 HSPB1P04792 205 aaKnown RBP13.94□□□□□ -0.18
SDC1-203ENST00000403076 RUNX1Q01196 453 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 C8orf86Q6ZUL3 223 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 RSG1Q9BU20 258 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 NPCDR1Q9BY65 106 aa13.94□□□□□ -0.18
SDC1-203ENST00000403076 BMPR1BO00238 502 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 OR2C1O95371 312 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 RD3LP0DJH9 198 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 TPT1P13693 172 aaKnown RBP13.93□□□□□ -0.18
SDC1-203ENST00000403076 YPEL3P61236 119 aaPredicted RBP13.93□□□□□ -0.18
SDC1-203ENST00000403076 RELQ04864 619 aaPredicted RBP13.93□□□□□ -0.18
SDC1-203ENST00000403076 ZNF616Q08AN1 781 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 DEFB136Q30KP8 78 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 SLC51BQ86UW2 128 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 NDUFA11Q86Y39 141 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 C3orf56Q8N813 242 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 OR11H1Q8NG94 326 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 Q8WTZ3 238 aa13.93□□□□□ -0.18
SDC1-203ENST00000403076 IGHV4OR15-8A0A075B7B6 117 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 A0A087WW49 117 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 YIF1AO95070 293 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 GATA2P23769 480 aaPredicted RBP13.92□□□□□ -0.18
SDC1-203ENST00000403076 SELENOTP62341 195 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 RPEL1Q2QD12 228 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 MIC13Q5XKP0 118 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 BPIFCQ8NFQ6 507 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 OR1N2Q8NGR9 330 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 GNPNAT1Q96EK6 184 aaPredicted RBP13.92□□□□□ -0.18
SDC1-203ENST00000403076 GGTLC1Q9BX51 225 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 SLC45A2Q9UMX9 530 aa13.92□□□□□ -0.18
SDC1-203ENST00000403076 LINC01619G3V211 115 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 TOMM40O96008 361 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 PSG1P11464 419 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 ATP6V0CP27449 155 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 ZNF600Q6ZNG1 722 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 BAP18Q8IXM2 172 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 KCNIP2Q9NS61 270 aa13.91□□□□□ -0.18
SDC1-203ENST00000403076 RPL29P47914 159 aaKnown RBP13.9□□□□□ -0.18
SDC1-203ENST00000403076 TMEM182Q6ZP80 229 aaPredicted RBP13.9□□□□□ -0.18
SDC1-203ENST00000403076 OR51G1Q8NGK1 321 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms