RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TENM1Q9UKZ4 2725 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 A0A087X0K7 114 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 SSSCA1O60232 199 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 REG1AP05451 166 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 PVALBP20472 110 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-202ENST00000394943 NUP62P37198 522 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-202ENST00000394943 SELENOTP62341 195 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 C8orf86Q6ZUL3 223 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 OR9G4Q8NGQ1 327 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 TMEM147Q9BVK8 224 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 C1QBP02746 253 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 PRH1P02810 166 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 UXS1Q8NBZ7 420 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 CYTL1Q9NRR1 136 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 UFC1Q9Y3C8 167 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 DYNC2H1Q8NCM8 4307 aaKnown RBP5.32□□□□□ -1.56
LIMA1-202ENST00000394943 TAAR5O14804 337 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 SSNA1O43805 119 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 ARL3P36405 182 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 KCNRGQ8N5I3 272 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 OR11H1Q8NG94 326 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 STOML3Q8TAV4 291 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 DLX4Q92988 240 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-202ENST00000394943 C17orf77Q96MU5 243 aa5.32□□□□□ -1.56
LIMA1-202ENST00000394943 PSMG3Q9BT73 122 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-202ENST00000394943 TNCP24821 2201 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 C5orf51A6NDU8 294 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 SNCAP37840 140 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 OPRK1P41145 380 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 OR2F1Q13607 317 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 C9orf66Q5T8R8 295 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 LCE2DQ5TA82 110 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-202ENST00000394943 RNASE11Q8TAA1 199 aaKnown RBP5.31□□□□□ -1.56
LIMA1-202ENST00000394943 ATP5SQ99766 215 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 C2orf70A6NJV1 201 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 NDUFS6O75380 124 aaKnown RBP5.31□□□□□ -1.56
LIMA1-202ENST00000394943 CCNKO75909 580 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 SIX6O95475 246 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 RLN2P04090 185 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 CLEC3BP05452 202 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 SLC25A24Q6NUK1 477 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 C16orf54Q6UWD8 224 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 ARL6IP6Q8N6S5 226 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 OR10P1Q8NGE3 313 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 MGST2Q99735 147 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 PEMTQ9UBM1 199 aa5.31□□□□□ -1.56
LIMA1-202ENST00000394943 ZMAT5Q9UDW3 170 aaKnown RBP5.31□□□□□ -1.56
LIMA1-202ENST00000394943 SOCS3O14543 225 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 SCGB2A1O75556 95 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 FABP1P07148 127 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 IAPPP10997 89 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 OR10J1P30954 320 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 Q5BKY6 102 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 LINC00322Q6ZN03 302 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-202ENST00000394943 GLMPQ8WWB7 406 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 GINS3Q9BRX5 216 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 WDR61Q9GZS3 305 aaKnown RBP5.3□□□□□ -1.56
LIMA1-202ENST00000394943 TEP1Q99973 2627 aaKnown RBP5.3□□□□□ -1.56
LIMA1-202ENST00000394943 IGHV7-4-1A0A0J9YVY3 117 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 H3BRN7 92 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 OVOL1O14753 267 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 DEFA4P12838 97 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 CXCL2P19875 107 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 HBG1P69891 147 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 HBG2P69892 147 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 TOMM20LQ6UXN7 152 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 LCNL1Q6ZST4 164 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 CYP2G1PQ6ZSU1 146 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 PPP1R14BQ96C90 147 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 GPR82Q96P67 336 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 MAGT1Q9H0U3 335 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 WFDC1Q9HC57 220 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 TMEM14CQ9P0S9 112 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 MBD2Q9UBB5 411 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 C2CD3Q4AC94 2353 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 FAM24AA6NFZ4 105 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 WRBO00258 174 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 ZNF253O75346 499 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 DFFBO76075 338 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 RPL12P30050 165 aaKnown RBP5.3□□□□□ -1.56
LIMA1-202ENST00000394943 SLC38A11Q08AI6 406 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 SPINK9Q5DT21 86 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 ZNF546Q86UE3 836 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 BPIFCQ8NFQ6 507 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 OR11H4Q8NGC9 324 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 MS4A10Q96PG2 267 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 GGTLC1Q9BX51 225 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 C19orf73Q9NVV2 129 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 SMPXQ9UHP9 88 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 RNF24Q9Y225 148 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 DNAH9Q9NYC9 4486 aa5.3□□□□□ -1.56
LIMA1-202ENST00000394943 SEC14L6B5MCN3 397 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 IFNA10P01566 189 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 EIF2B2P49770 351 aaKnown RBP5.29□□□□□ -1.56
LIMA1-202ENST00000394943 PMS2P11Q13670 270 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 MLANAQ16655 118 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 TEPPQ6URK8 271 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 CLEC19AQ6UXS0 136 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 STPG3Q8N7X2 389 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 DAZ1Q9NQZ3 744 aaKnown RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms