RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF843Q8N446 348 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 C1orf162Q8NEQ5 155 aaPredicted RBP9.09□□□□□ -0.95
CUX1-204ENST00000393824 C1orf159Q96HA4 380 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 TMEM70Q9BUB7 260 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 NPVFQ9HCQ7 196 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 TNFRSF19Q9NS68 423 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 OOEPA6NGQ2 149 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 C3orf80F5H4A9 247 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 IGLV2-8P01709 118 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 NPY1RP25929 384 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 MC5RP33032 325 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 SSTR5P35346 364 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 TCL1AP56279 114 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 PSG9Q00887 426 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 FXYD3Q14802 87 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 PSG3Q16557 428 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 IBA57Q5T440 356 aaKnown RBP9.09□□□□□ -0.95
CUX1-204ENST00000393824 PET117Q6UWS5 81 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 ERASQ7Z444 233 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 HSD17B10Q99714 261 aaKnown RBP9.09□□□□□ -0.95
CUX1-204ENST00000393824 SAP30LQ9HAJ7 183 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 USF3Q68DE3 2245 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 NBPF19A0A087WUL8 3843 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 FOXH1O75593 365 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 OR2J3O76001 311 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 IGLV1-44P01699 117 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 HLA-DRB1P01911 266 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 CRYBB3P26998 211 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 MSMPQ1L6U9 139 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 SPATA31B1PQ5VZV4 182 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 SPATA12Q7Z6I5 190 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 NANOS1Q8WY41 292 aaKnown RBP9.08□□□□□ -0.96
CUX1-204ENST00000393824 COMMD5Q9GZQ3 224 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 SLC25A10Q9UBX3 287 aaPredicted RBP9.08□□□□□ -0.96
CUX1-204ENST00000393824 PSG11Q9UQ72 335 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 HELZ2Q9BYK8 2649 aaKnown RBP9.08□□□□□ -0.96
CUX1-204ENST00000393824 MUC21A0A0G2JKD1 596 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 MUC21A0A140T8X8 626 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 OR4C46A6NHA9 309 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 IGLC1P0CG04 106 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 VDAC2P45880 294 aaPredicted RBP9.08□□□□□ -0.96
CUX1-204ENST00000393824 ALKBH6Q3KRA9 238 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 MUC21Q5SSG8 566 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 SLC25A34Q6PIV7 304 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 ZNF808Q8N4W9 903 aaPredicted RBP9.08□□□□□ -0.96
CUX1-204ENST00000393824 OR10W1Q8NGF6 305 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 OR52E5Q8NH55 327 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 TMEM167BQ9NRX6 74 aa9.08□□□□□ -0.96
CUX1-204ENST00000393824 PEF1Q9UBV8 284 aaKnown RBP9.08□□□□□ -0.96
CUX1-204ENST00000393824 SVEP1Q4LDE5 3571 aa9.07□□□□□ -0.96
CUX1-204ENST00000393824 GNG7O60262 68 aa9.07□□□□□ -0.96
CUX1-204ENST00000393824 PPOXP50336 477 aa9.07□□□□□ -0.96
CUX1-204ENST00000393824 TIMM23BQ5SRD1 257 aa9.07□□□□□ -0.96
CUX1-204ENST00000393824 FZR1Q9UM11 496 aa9.07□□□□□ -0.96
CUX1-204ENST00000393824 AKAP6Q13023 2319 aa9.07□□□□□ -0.96
CUX1-204ENST00000393824 C12orf77C9JDV5 145 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 C16orf97H3BN30 126 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 HAND1O96004 215 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 OR9G9P0C7N8 305 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 PPIAL4GP0DN37 164 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 FAM162BQ5T6X4 162 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 STPG3Q8N7X2 389 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 SLC25A40Q8TBP6 338 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 SSMEM1Q8WWF3 244 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 ATP6V0BQ99437 205 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 CELSR2Q9HCU4 2923 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 TRAV8-6A0A0B4J262 113 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 LINC00473A8K010 186 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 M0R1B8 84 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 PRR20EP86478 221 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 PRR20CP86479 221 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 PRR20DP86480 221 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 PRR20BP86481 221 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 PRR20AP86496 221 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 TEPPQ6URK8 271 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 WDR86Q86TI4 376 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 KIR3DL3Q8N743 410 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 FER1L6-AS1Q8NA97 138 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 STXBP6Q8NFX7 210 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 LINC01560Q8TB33 94 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 MBD6Q96DN6 1003 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 IGF2BP2-AS1Q96M15 143 aa9.06□□□□□ -0.96
CUX1-204ENST00000393824 HBZP02008 142 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 TBC1D28Q2M2D7 210 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 FAM120AOSQ5T036 256 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 TRAT1Q6PIZ9 186 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 C1orf122Q6ZSJ8 110 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 ST6GALNAC6Q969X2 333 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 HEYLQ9NQ87 328 aaPredicted RBP9.05□□□□□ -0.96
CUX1-204ENST00000393824 TP73-AS1Q9UF72 201 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 SYS1-DBNDD2H3BUS1 97 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 GATA2P23769 480 aaPredicted RBP9.05□□□□□ -0.96
CUX1-204ENST00000393824 MPV17P39210 176 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 RPL8P62917 257 aaKnown RBP9.05□□□□□ -0.96
CUX1-204ENST00000393824 HIST1H1AQ02539 215 aaPredicted RBP9.05□□□□□ -0.96
CUX1-204ENST00000393824 RAB31Q13636 194 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 PSG5Q15238 335 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 GDF5OSQ5U4N7 250 aa9.05□□□□□ -0.96
CUX1-204ENST00000393824 RNASEKQ6P5S7 137 aaKnown RBP9.05□□□□□ -0.96
CUX1-204ENST00000393824 FAM231DQ6ZW35 169 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms