RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 DEFB112Q30KQ8 113 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 GBGT1Q8N5D6 347 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 ZBTB34Q8NCN2 500 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 RAB40CQ96S21 281 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF134P52741 427 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 C3orf36Q3SXR2 165 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 DTX2Q86UW9 622 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 C3orf56Q8N813 242 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 SLC24A4Q8NFF2 622 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 FUT9Q9Y231 359 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM56-RWDD3S4R434 201 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 FAM181BA6NEQ2 426 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 BUB1B-PAK6H3BSN5 160 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 EREGO14944 169 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 NBR2O15453 112 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 GPR183P32249 361 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 FAM3BP58499 235 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-205ENST00000392004 C1orf122Q6ZSJ8 110 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 PPP1R27Q86WC6 154 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 SIGLEC9Q9Y336 463 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 C17orf112F2Z3M2 114 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 H0Y980 276 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 DUTP33316 252 aaKnown RBP8.36□□□□□ -1.07
COL6A3-205ENST00000392004 TFF3Q07654 80 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 CIARTQ8N365 385 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-205ENST00000392004 SIGLECL1Q8N7X8 197 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 CMTM2Q8TAZ6 248 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 ADAMTS20P59510 1910 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 IGKV3-20P01619 116 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 RPL29P47914 159 aaKnown RBP8.36□□□□□ -1.07
COL6A3-205ENST00000392004 ID3Q02535 119 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 LRRC75BQ2VPJ9 315 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 TPTE2P1Q5T6R2 138 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 C19orf35Q6ZS72 473 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF295-AS1Q8N0V1 137 aa8.36□□□□□ -1.07
COL6A3-205ENST00000392004 SRSF12Q8WXF0 261 aaKnown RBP8.36□□□□□ -1.07
COL6A3-205ENST00000392004 IGHV1-69DA0A0B4J2H0 117 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 A0A1B0GWJ7 208 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 IGHV1-69P01742 117 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 GATA2P23769 480 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-205ENST00000392004 FAM120AOSQ5T036 256 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 CLEC19AQ6UXS0 136 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 NPIPB3Q92617 1050 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 HSPE1P61604 102 aaKnown RBP8.35□□□□□ -1.07
COL6A3-205ENST00000392004 FAM216AQ8WUB2 273 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 RBKSQ9H477 322 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 NPIPB11E5RHQ5 1161 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 G3V318 75 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 M0QZK8 103 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 GGCTO75223 188 aaKnown RBP8.35□□□□□ -1.07
COL6A3-205ENST00000392004 ERVFC1-1P60608 527 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM41BQ5BJD5 291 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 UTF1Q5T230 341 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 TEX29Q8N6K0 151 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 OR4F5Q8NH21 305 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 Q8TCH9 128 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 ARPC1AQ92747 370 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 OR4F4Q96R69 305 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM204Q9BSN7 226 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 PRSS22Q9GZN4 317 aa8.35□□□□□ -1.07
COL6A3-205ENST00000392004 CD55P08174 381 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 BTF3L4Q96K17 158 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 FBXL7Q9UJT9 491 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 GOLT1BQ9Y3E0 138 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 COL6A5A8TX70 2615 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 TEX15Q9BXT5 2789 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 IGLV3-1P01715 115 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 VDAC2P45880 294 aaPredicted RBP8.34□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF137PP52743 207 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 SERF2P84101 59 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 C17orf58Q2M2W7 97 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 FFAR4Q5NUL3 377 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 CYP2G1PQ6ZSU1 146 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM170AQ8WVE7 144 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 MBD3L1Q8WWY6 194 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 ANAPC16Q96DE5 110 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 UCP1P25874 307 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 RPEL1Q2QD12 228 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 CRIP3Q6Q6R5 217 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 DUX3Q96PT4 197 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM147Q9BVK8 224 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 C11orf1Q9H5F2 150 aa8.34□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF430Q9H8G1 570 aaPredicted RBP8.34□□□□□ -1.07
COL6A3-205ENST00000392004 CRYBG3Q68DQ2 2970 aa8.34□□□□□ -1.08
COL6A3-205ENST00000392004 UBR5O95071 2799 aaPredicted RBP8.34□□□□□ -1.08
COL6A3-205ENST00000392004 TMEM50AO95807 157 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 RPLP1P05386 114 aaKnown RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 OR10J1P30954 320 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 MEF2BQ02080 365 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 FAM78BQ5VT40 261 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 WNT10AQ9GZT5 417 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 GSX1Q9H4S2 264 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 CPAMD8Q8IZJ3 1885 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 CNN1P51911 297 aaKnown RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 CX3CL1P78423 397 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 AARDQ4LEZ3 155 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 ETFRF1Q6IPR1 90 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 OR4X2Q8NGF9 303 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 PSMG3Q9BT73 122 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 SNHG12Q9BXW3 62 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms