RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 A0A1B0GTI1 187 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 TMEM256Q8N2U0 113 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 DMRTC2Q8IXT2 367 aaPredicted RBP12.87□□□□□ -0.35
COL5A1-201ENST00000371817 ARPC1AQ92747 370 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 MRPL27Q9P0M9 148 aaKnown RBP12.87□□□□□ -0.35
COL5A1-201ENST00000371817 FOXA2Q9Y261 457 aaPredicted RBP12.87□□□□□ -0.35
COL5A1-201ENST00000371817 FAM231BA6NCW3 169 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 IFNL4K9M1U5 179 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 A0A0U1RRA0 63 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 MPZP25189 248 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 CENPVL1A0A0U1RR11 272 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 CD33P20138 364 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 IGHV2-70P01814 119 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 CD7P09564 240 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 TM2D1Q9BX74 207 aa12.87□□□□□ -0.35
COL5A1-201ENST00000371817 PAX4O43316 350 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 FCN3O75636 299 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 C18orf12Q96KH6 178 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 NRXN3Q9Y4C0 1643 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 ZNF826PQ6ZT77 177 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 C16orf97H3BN30 126 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 C3orf79P0CE67 100 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 GNG5P63218 68 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 PILRBQ9UKJ0 227 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 IGLV1-36A0A0B4J1U3 117 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 RBM3P98179 157 aaKnown RBP12.86□□□□□ -0.35
COL5A1-201ENST00000371817 RBMY1FQ15415 496 aaKnown RBP12.86□□□□□ -0.35
COL5A1-201ENST00000371817 SCARF2Q96GP6 870 aaPredicted RBP12.86□□□□□ -0.35
COL5A1-201ENST00000371817 SLC25A47Q6Q0C1 308 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 OR9G1Q8NH87 305 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 FAM57AQ8TBR7 257 aa12.86□□□□□ -0.35
COL5A1-201ENST00000371817 CCL1P22362 96 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 CHAC1Q9BUX1 264 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 CLEC7AQ9BXN2 247 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 SNHG12Q9BXW3 62 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 SS18L2Q9UHA2 77 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 SIPA1L1O43166 1804 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 IGKV1D-16P01601 117 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 MESP2Q0VG99 397 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 CDKN1BP46527 198 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 OSR1Q8TAX0 266 aaPredicted RBP12.85□□□□□ -0.35
COL5A1-201ENST00000371817 ZNF625Q96I27 306 aaPredicted RBP12.85□□□□□ -0.35
COL5A1-201ENST00000371817 D6R8Y8 96 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 LRP5O75197 1615 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 NABP1Q96AH0 204 aa12.85□□□□□ -0.35
COL5A1-201ENST00000371817 NGFRP08138 427 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 AGRNO00468 2067 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 BTCP35070 178 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 RPL32P62910 135 aaKnown RBP12.84□□□□□ -0.35
COL5A1-201ENST00000371817 IGHV3-35A0A0C4DH35 117 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 IGHV3-66A0A0C4DH42 116 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 HOXD3P31249 432 aaPredicted RBP12.84□□□□□ -0.35
COL5A1-201ENST00000371817 SMAD7O15105 426 aaKnown RBP12.84□□□□□ -0.35
COL5A1-201ENST00000371817 ZNF721Q8TF20 911 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 SLC25A28Q96A46 364 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 IGFBP6P24592 240 aaPredicted RBP12.84□□□□□ -0.35
COL5A1-201ENST00000371817 RPL39P5Q59GN2 51 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 TMEM144Q7Z5S9 345 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 GREM1O60565 184 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.84□□□□□ -0.35
COL5A1-201ENST00000371817 SCRT1Q9BWW7 348 aa12.84□□□□□ -0.35
COL5A1-201ENST00000371817 TMEM190Q8WZ59 177 aa12.83□□□□□ -0.35
COL5A1-201ENST00000371817 C20orf144Q9BQM9 153 aa12.83□□□□□ -0.35
COL5A1-201ENST00000371817 REG4Q9BYZ8 158 aa12.83□□□□□ -0.35
COL5A1-201ENST00000371817 CREBBPQ92793 2442 aa12.83□□□□□ -0.35
COL5A1-201ENST00000371817 SOCS3O14543 225 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 COX5BP10606 129 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 B5MCH6 92 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 IGHMP01871 453 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 APOBEC4Q8WW27 367 aaKnown RBP12.83□□□□□ -0.36
COL5A1-201ENST00000371817 ZNF576Q9H609 170 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 TRAV1-1A0A0B4J248 108 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 A0A1B0GWJ7 208 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 EFNB3Q15768 340 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 ZNF784Q8NCA9 323 aaPredicted RBP12.83□□□□□ -0.36
COL5A1-201ENST00000371817 AGMATQ9BSE5 352 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 ARRDC1-AS1Q9H2J1 176 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 TICRRQ7Z2Z1 1910 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 TAF1LQ8IZX4 1826 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 ITLN1Q8WWA0 313 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 TMEM126AQ9H061 195 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 NPIPB13A6NJU9 1138 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 COL9A1P20849 921 aa12.83□□□□□ -0.36
COL5A1-201ENST00000371817 C9orf50Q5SZB4 431 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 PHF7Q9BWX1 381 aaPredicted RBP12.82□□□□□ -0.36
COL5A1-201ENST00000371817 LY6G6FQ5SQ64 297 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 GLRXP35754 106 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 UBL5Q9BZL1 73 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 MBNL3Q9NUK0 354 aaKnown RBP12.82□□□□□ -0.36
COL5A1-201ENST00000371817 DTX4Q9Y2E6 619 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 IGHV3OR16-13A0A075B7E8 117 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 IGHV3-49A0A0A0MS15 119 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 IGHV3-74A0A0B4J1X5 117 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 A0A1W2PPV9 198 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 FGF11Q92914 225 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 TRGV2A0A075B6R0 118 aa12.82□□□□□ -0.36
COL5A1-201ENST00000371817 MAFAQ8NHW3 353 aaPredicted RBP12.82□□□□□ -0.36
COL5A1-201ENST00000371817 POLR3KQ9Y2Y1 108 aaPredicted RBP12.82□□□□□ -0.36
COL5A1-201ENST00000371817 SLAQ13239 276 aa12.81□□□□□ -0.36
COL5A1-201ENST00000371817 CT55Q8WUE5 264 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms