RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 AMBPP02760 352 aa11.23□□□□□ -0.61
COL6A3-202ENST00000347401 PF4V1P10720 104 aa11.23□□□□□ -0.61
COL6A3-202ENST00000347401 COL9A1P20849 921 aa11.23□□□□□ -0.61
COL6A3-202ENST00000347401 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-202ENST00000347401 A0A0J9YW62 118 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 HRKO00198 91 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 SPINT1O43278 529 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 FGF11Q92914 225 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 LYPD1Q8N2G4 141 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 CCL13Q99616 98 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 RNF126Q9BV68 326 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 OTOGLQ3ZCN5 2332 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 PLSCR4Q9NRQ2 329 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 TRAV14DV4A0A0A6YYC5 116 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 CMC4P56277 68 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-202ENST00000347401 Q5BKY6 102 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 C21orf62Q9NYP8 219 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 PPIAL4CA0A0B4J2A2 164 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 PPIAL4GP0DN37 164 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 CFHR5Q9BXR6 569 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 EPDR1Q9UM22 224 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 IGLV3-21P80748 117 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-202ENST00000347401 TMEM155Q4W5P6 130 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 IGKV1-8A0A0C4DH67 115 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 M0R381 172 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 TDGF1P13385 188 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 CCL1P22362 96 aa11.22□□□□□ -0.61
COL6A3-202ENST00000347401 SEPSECSQ9HD40 501 aaKnown RBP11.22□□□□□ -0.61
COL6A3-202ENST00000347401 VKORC1Q9BQB6 163 aa11.21□□□□□ -0.61
COL6A3-202ENST00000347401 IGKV3OR2-268A0A0C4DH90 116 aa11.21□□□□□ -0.61
COL6A3-202ENST00000347401 PEBP1P30086 187 aaKnown RBP11.21□□□□□ -0.61
COL6A3-202ENST00000347401 ZNF501Q96CX3 271 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-202ENST00000347401 TET2Q6N021 2002 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-202ENST00000347401 SMIM10L1P0DMW3 83 aa11.21□□□□□ -0.61
COL6A3-202ENST00000347401 SMIM10Q96HG1 83 aa11.21□□□□□ -0.61
COL6A3-202ENST00000347401 WDR90Q96KV7 1748 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 NTN1O95631 604 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 RNF115Q9Y4L5 304 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 A0A0G2JK05 382 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 DUSP14O95147 198 aaKnown RBP11.21□□□□□ -0.62
COL6A3-202ENST00000347401 FAM90A2PQ658T7 463 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 DUX5Q96PT3 197 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 THY1P04216 161 aa11.21□□□□□ -0.62
COL6A3-202ENST00000347401 TRGV11A0A075B6L2 103 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 LOC105371242A0A075B767 164 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 POU2AF1Q16633 256 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 PCNX3Q9H6A9 2034 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 LHX2P50458 406 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 ZNF205O95201 554 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 TMEM42Q69YG0 159 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 C20orf144Q9BQM9 153 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 VWC2LB2RUY7 222 aa11.2□□□□□ -0.62
COL6A3-202ENST00000347401 TRAV5A0A0B4J249 113 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 IQCF6A8MYZ5 107 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 KIAA1671Q9BY89 1806 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 ZNF48Q96MX3 618 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-202ENST00000347401 DPM3Q9P2X0 92 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 HILPDAQ9Y5L2 63 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 REPIN1Q9BWE0 567 aaKnown RBP11.19□□□□□ -0.62
COL6A3-202ENST00000347401 FAM231BA6NCW3 169 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 H3BMM0 161 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 MLNRO43193 412 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 C8orf46Q8TAG6 207 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 SPINK8P0C7L1 97 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 GZMBP10144 247 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 CCL8P80075 99 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 PMS2CLQ68D20 193 aa11.19□□□□□ -0.62
COL6A3-202ENST00000347401 TRAV2A0A0B4J234 112 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 LDLRAD4O15165 306 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 ZNF497Q6ZNH5 498 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 ITLN1Q8WWA0 313 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 PEMTQ9UBM1 199 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 BTCP35070 178 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 ZIC4Q8N9L1 334 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 IGHV3OR16-12A0A075B7B8 117 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 IGFBP2P18065 325 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 SPEM2Q0P670 501 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 TGIF1Q15583 401 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 LEPROTO15243 131 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 ID3Q02535 119 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 SPATA31B1PQ5VZV4 182 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 C16orf47Q6ZP98 133 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-202ENST00000347401 CST9LQ9H4G1 147 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 TOMM40O96008 361 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 TOMM7Q9P0U1 55 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 A8MWP6 167 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 ITGB1BP1O14713 200 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 TMEM258P61165 79 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 ATRAIDQ6UW56 229 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 FAM89BQ8N5H3 189 aa11.18□□□□□ -0.62
COL6A3-202ENST00000347401 PDE6HQ13956 83 aa11.17□□□□□ -0.62
COL6A3-202ENST00000347401 EFNB3Q15768 340 aa11.17□□□□□ -0.62
COL6A3-202ENST00000347401 C9orf153Q5TBE3 101 aa11.17□□□□□ -0.62
COL6A3-202ENST00000347401 FOXA2Q9Y261 457 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-202ENST00000347401 IGHV3-21A0A0B4J1V1 117 aa11.17□□□□□ -0.62
COL6A3-202ENST00000347401 RPL32P62910 135 aaKnown RBP11.17□□□□□ -0.62
COL6A3-202ENST00000347401 TPTE2P1Q5T6R2 138 aa11.17□□□□□ -0.62
COL6A3-202ENST00000347401 RNASE7Q9H1E1 156 aaKnown RBP11.17□□□□□ -0.62
COL6A3-202ENST00000347401 CSPG4Q6UVK1 2322 aa11.17□□□□□ -0.62
COL6A3-202ENST00000347401 SRSF8Q9BRL6 282 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms