RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CA1P00915 261 aaPredicted RBP14.35□□□□□ -0.11
LIME1-201ENST00000309546 IGKV1-17P01599 117 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 SULT1A3P0DMM9 295 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 SULT1A4P0DMN0 295 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 AKR1C4P17516 323 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 TNFSF8P32971 234 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 P2RY1P47900 373 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 IL22RA2Q969J5 263 aa14.35□□□□□ -0.11
LIME1-201ENST00000309546 TRAV2A0A0B4J234 112 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 SLC25A4P12235 298 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 NPY1RP25929 384 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 CRYBB3P26998 211 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 PRSS54Q6PEW0 395 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 OR1S2Q8NGQ3 325 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 RNASEH2CQ8TDP1 164 aaKnown RBP14.34□□□□□ -0.11
LIME1-201ENST00000309546 RARRES2Q99969 163 aa14.34□□□□□ -0.11
LIME1-201ENST00000309546 IGLC1P0CG04 106 aa14.33□□□□□ -0.12
LIME1-201ENST00000309546 OR10J1P30954 320 aa14.33□□□□□ -0.12
LIME1-201ENST00000309546 RBMS2Q15434 407 aaKnown RBP14.33□□□□□ -0.12
LIME1-201ENST00000309546 GATAD1Q8WUU5 269 aa14.33□□□□□ -0.12
LIME1-201ENST00000309546 TMEM170AQ8WVE7 144 aa14.33□□□□□ -0.12
LIME1-201ENST00000309546 LINC00476Q8WZB0 136 aa14.33□□□□□ -0.12
LIME1-201ENST00000309546 GRAMD2BQ96HH9 432 aa14.33□□□□□ -0.12
LIME1-201ENST00000309546 IFNA10P01566 189 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 ZNF688P0C7X2 276 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 ETFRF1Q6IPR1 90 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 CEMP1Q6PRD7 247 aaPredicted RBP14.32□□□□□ -0.12
LIME1-201ENST00000309546 STHQ8IWL8 128 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 OR11H2Q8NH07 326 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 Q8WTZ3 238 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 ACY3Q96HD9 319 aa14.32□□□□□ -0.12
LIME1-201ENST00000309546 A0A0B4J2A0 478 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 K7EQG2 157 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 LY6G6CO95867 125 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 HNRNPCP07910 306 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIME1-201ENST00000309546 ANXA3P12429 323 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 ATF4P18848 351 aaPredicted RBP14.31□□□□□ -0.12
LIME1-201ENST00000309546 CCR6P51684 374 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 SUPT4H1P63272 117 aaKnown RBP14.31□□□□□ -0.12
LIME1-201ENST00000309546 SMCO1Q147U7 214 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 NMSQ5H8A3 153 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 LYZL2Q7Z4W2 148 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 NPIPB3Q92617 1050 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 SOSTQ9BQB4 213 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 CACFD1Q9UGQ2 172 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 SHPKQ9UHJ6 478 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 BIRC6Q9NR09 4857 aa14.31□□□□□ -0.12
LIME1-201ENST00000309546 AGRNO00468 2067 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 CCDC160A6NGH7 325 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 IL4P05112 153 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 FAUP35544 74 aaKnown RBP14.3□□□□□ -0.12
LIME1-201ENST00000309546 EIF2B2P49770 351 aaKnown RBP14.3□□□□□ -0.12
LIME1-201ENST00000309546 YPEL3P61236 119 aaPredicted RBP14.3□□□□□ -0.12
LIME1-201ENST00000309546 SRPXP78539 464 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 PYDC2Q56P42 97 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 TMED4Q7Z7H5 227 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 NOXA1Q86UR1 476 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 LGI3Q8N145 548 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 DTD1Q8TEA8 209 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 RBKSQ9H477 322 aa14.3□□□□□ -0.12
LIME1-201ENST00000309546 KLK5Q9Y337 293 aaPredicted RBP14.3□□□□□ -0.12
LIME1-201ENST00000309546 DHRS2Q13268 280 aa14.29□□□□□ -0.12
LIME1-201ENST00000309546 OR1S1Q8NH92 325 aa14.29□□□□□ -0.12
LIME1-201ENST00000309546 PHLDA1Q8WV24 401 aaPredicted RBP14.29□□□□□ -0.12
LIME1-201ENST00000309546 HSPB7Q9UBY9 170 aa14.29□□□□□ -0.12
LIME1-201ENST00000309546 HELTA6NFD8 242 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 KNCNA6PVL3 124 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 DEFB4AO15263 64 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 AP3S2P59780 193 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 KLF9Q13886 244 aaPredicted RBP14.28□□□□□ -0.12
LIME1-201ENST00000309546 USF2Q15853 346 aaPredicted RBP14.28□□□□□ -0.12
LIME1-201ENST00000309546 TOMM5Q8N4H5 51 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 TRIM63Q969Q1 353 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 U3KQ87 197 aa14.28□□□□□ -0.12
LIME1-201ENST00000309546 TOMM40O96008 361 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 IFNA4P05014 189 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 RD3LP0DJH9 198 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 C16orf54Q6UWD8 224 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 DCANP1Q8TF63 244 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 GLMPQ8WWB7 406 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 C11orf68Q9H3H3 251 aaKnown RBP14.27□□□□□ -0.13
LIME1-201ENST00000309546 FBXL17Q9UF56 701 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 U3KQE9 123 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 V9GYH0 126 aa14.27□□□□□ -0.13
LIME1-201ENST00000309546 VAMP1P23763 118 aa14.26□□□□□ -0.13
LIME1-201ENST00000309546 S100A5P33763 92 aa14.26□□□□□ -0.13
LIME1-201ENST00000309546 NANOS2P60321 138 aaKnown RBP14.26□□□□□ -0.13
LIME1-201ENST00000309546 PSMG4Q5JS54 123 aa14.26□□□□□ -0.13
LIME1-201ENST00000309546 ACTL10Q5JWF8 245 aa14.26□□□□□ -0.13
LIME1-201ENST00000309546 TRPT1Q86TN4 253 aaKnown RBP14.26□□□□□ -0.13
LIME1-201ENST00000309546 C11orf45Q8TAV5 145 aa14.26□□□□□ -0.13
LIME1-201ENST00000309546 AP2S1P53680 142 aaPredicted RBP14.25□□□□□ -0.13
LIME1-201ENST00000309546 OR51G1Q8NGK1 321 aa14.25□□□□□ -0.13
LIME1-201ENST00000309546 PBDC1Q9BVG4 233 aa14.25□□□□□ -0.13
LIME1-201ENST00000309546 PIGBOS1A0A0B4J2F0 54 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 ZFP92A6NM28 416 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 IAPPP10997 89 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 PSG1P11464 419 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 C4BPBP20851 252 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 TMEM128Q5BJH2 165 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms