RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LCTP09848 1927 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 PPIFP30405 207 aaKnown RBP9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 GAGE5Q13069 117 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 GAGE6Q13070 117 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 TDHQ8IZJ6 230 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 KLHDC3Q9BQ90 382 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 NRXN3Q9Y4C0 1643 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 DPH3Q96FX2 82 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 ZNF385AQ96PM9 386 aaKnown RBP9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 DLL3Q9NYJ7 618 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 CD160O95971 181 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 CALYQ9NYX4 217 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 IFI27L2Q9H2X8 130 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 A0A1B0GW64 132 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 SMAD7O15105 426 aaKnown RBP9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 CDPF1Q6NVV7 123 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 HAPLN4Q86UW8 402 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 RFNGQ9Y644 331 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 C17orf98A8MV24 154 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 PTPN13Q12923 2485 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 D6R8Y8 96 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 PROB1E7EW31 1015 aa9.9□□□□□ -0.82
SHROOM3-201ENST00000296043 GFRA3O60609 400 aa9.9□□□□□ -0.83
SHROOM3-201ENST00000296043 TMEM14DPA8MWL7 114 aa9.9□□□□□ -0.83
SHROOM3-201ENST00000296043 SVIPQ8NHG7 77 aa9.9□□□□□ -0.83
SHROOM3-201ENST00000296043 CFHR5Q9BXR6 569 aa9.9□□□□□ -0.83
SHROOM3-201ENST00000296043 TMEM240Q5SV17 173 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 PRADC1Q9BSG0 188 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 CCL25O15444 150 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 OR9G9P0C7N8 305 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 C9orf40Q8IXQ3 194 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 PYYP10082 97 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 LIMS2Q7Z4I7 341 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 C1QL2Q7Z5L3 287 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 GCSAMQ8N6F7 178 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 C3orf56Q8N813 242 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 TMEM258P61165 79 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 R3HDMLQ9H3Y0 253 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 IGLV1-36A0A0B4J1U3 117 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 LMO7DNF2Z398 122 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 SF3B5Q9BWJ5 86 aaKnown RBP9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 A0A1W2PS18 150 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 IFI27P40305 119 aaPredicted RBP9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 PSG4Q00888 419 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 ASCL5Q7RTU5 278 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 A0A087WV48 116 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 ZNF688P0C7X2 276 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 Q6ZWC4 215 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 QSER1Q2KHR3 1735 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 A0A1W2PQD3 144 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 CCL3P10147 92 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 TMEM42Q69YG0 159 aa9.89□□□□□ -0.83
SHROOM3-201ENST00000296043 WNT2P09544 360 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 CCDC144NLQ6NUI1 221 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 OTORQ9NRC9 128 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 RNF186Q9NXI6 227 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 PLXNA2O75051 1894 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 LINC00158P58513 81 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 MPV17P39210 176 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 C5orf47Q569G3 176 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 ATP5G2Q06055 141 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 SPEM2Q0P670 501 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 DUX5Q96PT3 197 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 C2CD3Q4AC94 2353 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 C9orf172C9J069 976 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 SLAQ13239 276 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 OR5P3Q8WZ94 311 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 SIT1Q9Y3P8 196 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 F8W1H4 67 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 J3KT08 172 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 MGST3O14880 152 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 ORMDL2Q53FV1 153 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 GPBAR1Q8TDU6 330 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 FOXA2Q9Y261 457 aaPredicted RBP9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 THY1P04216 161 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 FAM60AQ9NP50 221 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 CTGFP29279 349 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 RSPO4Q2I0M5 234 aaPredicted RBP9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 MAGEA5P43359 124 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 RNASE8Q8TDE3 154 aaKnown RBP9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 GLMPQ8WWB7 406 aa9.88□□□□□ -0.83
SHROOM3-201ENST00000296043 TNRC6CQ9HCJ0 1690 aaKnown RBP9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 A0A1W2PPM0 123 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 RAMP3O60896 148 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 LINC01551Q86U37 167 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 MYO18BQ8IUG5 2567 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 SMPXQ9UHP9 88 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 SLX1AQ9BQ83 275 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 ZNF703Q9H7S9 590 aaPredicted RBP9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 LOC102723996A0A087X1L8 192 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 MST1P26927 711 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 DENND4CQ5VZ89 1909 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 CLEC7AQ9BXN2 247 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 CD69Q07108 199 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 MORN5Q5VZ52 161 aa9.87□□□□□ -0.83
SHROOM3-201ENST00000296043 SMKR1H3BMG3 65 aa9.86□□□□□ -0.83
SHROOM3-201ENST00000296043 CD3EP07766 207 aa9.86□□□□□ -0.83
SHROOM3-201ENST00000296043 NUP35Q8NFH5 326 aa9.86□□□□□ -0.83
SHROOM3-201ENST00000296043 RASL10BQ96S79 203 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms