RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 DLL1O00548 723 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 GPR6P46095 362 aaPredicted RBP13.39□□□□□ -0.27
VPS54-201ENST00000272322 HES1Q14469 280 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 TOMM20LQ6UXN7 152 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 PATE2Q6UY27 113 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 FAM19A2Q8N3H0 131 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 HSPB9Q9BQS6 159 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 SSBP4Q9BWG4 385 aaPredicted RBP13.39□□□□□ -0.27
VPS54-201ENST00000272322 FKBP11Q9NYL4 201 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 CCL21O00585 134 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 CNIH1O95406 144 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 TAS2R45P59539 299 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 C2orf83Q53S99 150 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 IBA57Q5T440 356 aaKnown RBP13.39□□□□□ -0.27
VPS54-201ENST00000272322 IL36BQ9NZH7 164 aa13.39□□□□□ -0.27
VPS54-201ENST00000272322 IGHV3-35A0A0C4DH35 117 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 ISLRO14498 428 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 CD3EP07766 207 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 MUC15Q8N387 334 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 TMEM167BQ9NRX6 74 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 TNFRSF19Q9NS68 423 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 AMMECR1Q9Y4X0 333 aaPredicted RBP13.38□□□□□ -0.27
VPS54-201ENST00000272322 CORTO00230 105 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 USF1P22415 310 aaPredicted RBP13.38□□□□□ -0.27
VPS54-201ENST00000272322 PPOXP50336 477 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 VN1R17PQ8TDU5 208 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 ZNF257Q9Y2Q1 563 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 PAM16Q9Y3D7 125 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 TRAV8-1A0A0A6YYK1 113 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 RBP4P02753 201 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 KRTDAPP60985 99 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 KLRD1Q13241 179 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 Q71RC1 249 aaPredicted RBP13.38□□□□□ -0.27
VPS54-201ENST00000272322 SLC25A2Q9BXI2 301 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 ZNF835Q9Y2P0 537 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 ACACBO00763 2458 aa13.38□□□□□ -0.27
VPS54-201ENST00000272322 CDKN1AP38936 164 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 LYZP61626 148 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 PKIAP61925 76 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 FOXL1Q12952 345 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 BATFQ16520 125 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 VMA21Q3ZAQ7 101 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 DMRTC2Q8IXT2 367 aaPredicted RBP13.37□□□□□ -0.27
VPS54-201ENST00000272322 GBGT1Q8N5D6 347 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 V9GYV3 84 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 PGPA6NDG6 321 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 SLC25A5P05141 298 aaKnown RBP13.37□□□□□ -0.27
VPS54-201ENST00000272322 MFAP2P55001 183 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 LCN2P80188 198 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 SSX2Q16385 188 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 IQCJQ1A5X6 159 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 TBX15Q96SF7 602 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 RAXQ9Y2V3 346 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 MYO18BQ8IUG5 2567 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 RPEQ96AT9 228 aa13.37□□□□□ -0.27
VPS54-201ENST00000272322 C22orf46C9J442 243 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 POU2AF1Q16633 256 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 BTF3L4Q96K17 158 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 ITGB1BP1O14713 200 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 TMEM133Q9H2Q1 129 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 TP53TG3Q9ULZ0 132 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 DOPEY2Q9Y3R5 2298 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 PPIAL4CA0A0B4J2A2 164 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 IGLV2-23P01705 113 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 PPIAL4GP0DN37 164 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 MEF2CQ06413 473 aaPredicted RBP13.36□□□□□ -0.27
VPS54-201ENST00000272322 ATOH7Q8N100 152 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 TMEM186Q96B77 213 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 FAM167A-AS1Q96KT0 104 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 NGBQ9NPG2 151 aa13.36□□□□□ -0.27
VPS54-201ENST00000272322 IGHV2-26A0A0B4J1V2 119 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 IGHV3-23P01764 117 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 SRIP30626 198 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 RPL27AP46776 148 aaKnown RBP13.35□□□□□ -0.27
VPS54-201ENST00000272322 IGF2-ASQ6U949 168 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 A0A1W2PN81 502 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 ZNF253O75346 499 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 TMEM177Q53S58 311 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 ZNF705AQ6ZN79 300 aaPredicted RBP13.35□□□□□ -0.27
VPS54-201ENST00000272322 C11orf42Q8N5U0 333 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 RCHY1Q96PM5 261 aa13.35□□□□□ -0.27
VPS54-201ENST00000272322 MMDQ15546 238 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 IGKV1D-37A0A075B6S9 117 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 NDUFS7O75251 213 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 TYMSP04818 313 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 APOBEC3AP31941 199 aaPredicted RBP13.34□□□□□ -0.27
VPS54-201ENST00000272322 SUB1P53999 127 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS54-201ENST00000272322 TMEM155Q4W5P6 130 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 TMEM167AQ8TBQ9 72 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 GNB4Q9HAV0 340 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 SIAH2O43255 324 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 ZNF137PP52743 207 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 VSTM2AQ8TAG5 236 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 RNF114Q9Y508 228 aa13.34□□□□□ -0.27
VPS54-201ENST00000272322 TCF24Q7RTU0 167 aa13.33□□□□□ -0.27
VPS54-201ENST00000272322 RBPJQ06330 500 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 Q6ZWC4 215 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 PDPNQ86YL7 162 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 ST6GALNAC6Q969X2 333 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 CD99P14209 185 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 172.8 ms