RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 UTF1Q5T230 341 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 IGHMP01871 453 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 TMEM144Q7Z5S9 345 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 MYEOVQ96EZ4 313 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 GREB1Q4ZG55 1949 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 C7orf69Q9H7B7 122 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 GP6Q9HCN6 339 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 TPTE2P1Q5T6R2 138 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 TSKUQ8WUA8 353 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 LINC01465Q8N7H1 131 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 SDK2Q58EX2 2172 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 C1orf122Q6ZSJ8 110 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 TIMM21Q9BVV7 248 aa11.71□□□□□ -0.54
CCDC88A-201ENST00000263630 hADV29S1A0JD25 119 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 TCRAP04437 139 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 LINC00312Q9Y6C7 94 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 GPHA2Q96T91 129 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 FOXL1Q12952 345 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 POU2AF1Q16633 256 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 ASPHD2Q6ICH7 369 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 TNFSF13O75888 250 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 ZNF708P17019 499 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 RPL23P62829 140 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 Q6ZT83 130 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 MIR17HGQ75NE6 70 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 WFDC6Q9BQY6 131 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 ZNF561-AS1K7EIQ3 104 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 C5orf47Q569G3 176 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 PLA2G2FQ9BZM2 168 aa11.7□□□□□ -0.54
CCDC88A-201ENST00000263630 PKIGQ9Y2B9 76 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 TRPM7Q96QT4 1865 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 PAX8Q06710 450 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 GAGE12BA1L429 117 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 ATP5G3P48201 142 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 LHFPL6Q9Y693 200 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 A0A1W2PRE2 83 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 PRIMA1Q86XR5 153 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 THAP8Q8NA92 274 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 C9JAW5 83 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 RBM3P98179 157 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 FAM90A9PA6NNJ1 464 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 LHBP01229 141 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 CLPSL1A2RUU4 121 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 PSG8Q9UQ74 426 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 TNRC6AQ8NDV7 1962 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 TRBV5-7A0A0A0MS05 114 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 OR9G9P0C7N8 305 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 RPRMLQ8N4K4 120 aa11.69□□□□□ -0.54
CCDC88A-201ENST00000263630 YBX2Q9Y2T7 364 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 S4R3C0 116 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 IL18BPO95998 194 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 ZPLD1Q8TCW7 415 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 ZXDCQ2QGD7 858 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 TSC2P49815 1807 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 PRR19A6NJB7 356 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 TGIF1Q15583 401 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 NCOR1P1Q9H4R4 102 aa11.68□□□□□ -0.54
CCDC88A-201ENST00000263630 METRNQ9UJH8 293 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 CD33P20138 364 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 LTBRP36941 435 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 STRCQ7RTU9 1775 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 UBE2CO00762 179 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 LIMS1P48059 325 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 ZNF876PQ49A33 203 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 STPG1Q5TH74 334 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 CASP8AP2Q9UKL3 1982 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 GUSBP1Q15486 140 aa11.67□□□□□ -0.54
CCDC88A-201ENST00000263630 FAM166AQ6J272 317 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 SLC25A28Q96A46 364 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 IFI6P09912 130 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 UBE2V1Q13404 147 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 PSME4Q14997 1843 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 TMEM242Q9NWH2 141 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 XIRP1Q702N8 1843 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 BCORQ6W2J9 1755 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 TRGV1A0A0A0MS02 117 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 SPAARA0A1B0GVQ0 90 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 A0A1W2PQF6 199 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 UCP1P25874 307 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 SLC25A39Q9BZJ4 359 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 CACNA1BQ00975 2339 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 STRCP1A6NGW2 1772 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 ERVH48-1M5A8F1 160 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 PTPRFP10586 1907 aa11.66□□□□□ -0.54
CCDC88A-201ENST00000263630 GAGE12JA6NER3 117 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 GAGE1Q13065 139 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 GAGE4Q13068 117 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 GAGE5Q13069 117 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 GAGE6Q13070 117 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 KIR3DS1Q14943 382 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 TM2D1Q9BX74 207 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 GNG5P63218 68 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 SEC61GP60059 68 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 DOCK4Q8N1I0 1966 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 LY6G5BQ8NDX9 201 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 IGHV3-11P01762 117 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 ADAMTSL5Q6ZMM2 481 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 PILRAQ9UKJ1 303 aa11.65□□□□□ -0.54
CCDC88A-201ENST00000263630 ACTL10Q5JWF8 245 aa11.65□□□□□ -0.55
CCDC88A-201ENST00000263630 RPUSD1Q9UJJ7 312 aaKnown RBP11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms