RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SDF2L1Q9HCN8 221 aa17.93■□□□□ 0.46
CDX1-201ENST00000231656 FUT9Q9Y231 359 aa17.93■□□□□ 0.46
CDX1-201ENST00000231656 GCHFRP30047 84 aa17.92■□□□□ 0.46
CDX1-201ENST00000231656 FAM78BQ5VT40 261 aa17.92■□□□□ 0.46
CDX1-201ENST00000231656 MIR17HGQ75NE6 70 aa17.92■□□□□ 0.46
CDX1-201ENST00000231656 OR2T10Q8NGZ9 312 aa17.92■□□□□ 0.46
CDX1-201ENST00000231656 ISOC2Q96AB3 205 aa17.92■□□□□ 0.46
CDX1-201ENST00000231656 F11RQ9Y624 299 aaKnown RBP17.92■□□□□ 0.46
CDX1-201ENST00000231656 SOX21Q9Y651 276 aaPredicted RBP17.92■□□□□ 0.46
CDX1-201ENST00000231656 PSMB11A5LHX3 300 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 IGHV3-48P01763 117 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 OR5G3P0C626 314 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 UBE2G2P60604 165 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 HES1Q14469 280 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 ETFRF1Q6IPR1 90 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 NANPQ8TBE9 248 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 MISP3Q96FF7 219 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 C19orf24Q9BVV8 132 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 FSHBP01225 129 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 BRS3P32247 399 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 BPIFB3P59826 476 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 EBI3Q14213 229 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 FAM120AOSQ5T036 256 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 Q8N6K4 173 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 HIST1H2BAQ96A08 127 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 YPEL4Q96NS1 127 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 SMIM7Q9BQ49 75 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 MEGF9Q9H1U4 602 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 PARLQ9H300 379 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 DMRT1Q9Y5R6 373 aa17.91■□□□□ 0.46
CDX1-201ENST00000231656 TCRBV4S1A1TA0A5B7 111 aa17.9■□□□□ 0.46
CDX1-201ENST00000231656 B4DEV8 164 aa17.9■□□□□ 0.46
CDX1-201ENST00000231656 NPPCP23582 126 aa17.9■□□□□ 0.46
CDX1-201ENST00000231656 ATP5G3P48201 142 aa17.9■□□□□ 0.46
CDX1-201ENST00000231656 RND2P52198 227 aa17.9■□□□□ 0.46
CDX1-201ENST00000231656 RPUSD4Q96CM3 377 aaKnown RBP17.9■□□□□ 0.46
CDX1-201ENST00000231656 NAT8Q9UHE5 227 aa17.9■□□□□ 0.46
CDX1-201ENST00000231656 CORTO00230 105 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 KRTAP1-1Q07627 177 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 C5orf64Q2M2E5 130 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 SLC25A33Q9BSK2 321 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 PDE6DO43924 150 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 OR2C1O95371 312 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 MT-CO2P00403 227 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 FAM106CPP0CH98 169 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 ZNF674Q2M3X9 581 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 CST9LP1Q5W188 147 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 TMEM37Q8WXS4 190 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 TXNDC17Q9BRA2 123 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 MXRA5Q9NR99 2828 aa17.89■□□□□ 0.45
CDX1-201ENST00000231656 CNIH1O95406 144 aa17.88■□□□□ 0.45
CDX1-201ENST00000231656 MT-ND4LP03901 98 aa17.88■□□□□ 0.45
CDX1-201ENST00000231656 CRYBA1P05813 215 aa17.88■□□□□ 0.45
CDX1-201ENST00000231656 ZNF90Q03938 601 aa17.88■□□□□ 0.45
CDX1-201ENST00000231656 TECRQ9NZ01 308 aaKnown RBP17.88■□□□□ 0.45
CDX1-201ENST00000231656 YTHDF2Q9Y5A9 579 aaKnown RBP17.88■□□□□ 0.45
CDX1-201ENST00000231656 CLN5O75503 358 aa17.87■□□□□ 0.45
CDX1-201ENST00000231656 SELENOTP62341 195 aa17.87■□□□□ 0.45
CDX1-201ENST00000231656 TMEM241Q24JQ0 296 aa17.87■□□□□ 0.45
CDX1-201ENST00000231656 TMEM116Q8NCL8 245 aa17.87■□□□□ 0.45
CDX1-201ENST00000231656 F6UZH7 168 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 CD5LO43866 347 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 FOLR2P14207 255 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 TMEM11P17152 192 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 ZNF503Q96F45 646 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 MRPL32Q9BYC8 188 aaKnown RBP17.86■□□□□ 0.45
CDX1-201ENST00000231656 SONP18583 2426 aaKnown RBP17.86■□□□□ 0.45
CDX1-201ENST00000231656 CTRB1P17538 263 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 KIAA0141Q14154 515 aaPredicted RBP17.86■□□□□ 0.45
CDX1-201ENST00000231656 FXYD3Q14802 87 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 CTRB2Q6GPI1 263 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 BCL6BQ8N143 479 aaPredicted RBP17.86■□□□□ 0.45
CDX1-201ENST00000231656 FAM24BQ8N5W8 94 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 OR51G1Q8NGK1 321 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 RNF2Q99496 336 aa17.86■□□□□ 0.45
CDX1-201ENST00000231656 PIFOQ8TCI5 191 aa17.85■□□□□ 0.45
CDX1-201ENST00000231656 C22orf15Q8WYQ4 148 aa17.85■□□□□ 0.45
CDX1-201ENST00000231656 TRGV9Q99603 122 aa17.85■□□□□ 0.45
CDX1-201ENST00000231656 SSX3Q99909 188 aa17.85■□□□□ 0.45
CDX1-201ENST00000231656 DNAJC4Q9NNZ3 241 aa17.85■□□□□ 0.45
CDX1-201ENST00000231656 CXorf65A6NEN9 183 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 RPL23P62829 140 aaKnown RBP17.84■□□□□ 0.45
CDX1-201ENST00000231656 PQLC2Q6ZP29 291 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 WNT10AQ9GZT5 417 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 TMEM167BQ9NRX6 74 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 TNFRSF19Q9NS68 423 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 ARL2-SNX15V9GYD0 113 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 I3L2K1 104 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 C8orf88P0DMB2 117 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 TAS2R45P59539 299 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 FLI1Q01543 452 aaPredicted RBP17.84■□□□□ 0.45
CDX1-201ENST00000231656 RNF212Q495C1 297 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 PATE2Q6UY27 113 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 C9orf139Q6ZV77 190 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 OR1L4Q8NGR5 311 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 FAM167A-AS1Q96KT0 104 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 PFDN5Q99471 154 aa17.84■□□□□ 0.45
CDX1-201ENST00000231656 IGHV3-21A0A0B4J1V1 117 aa17.83■□□□□ 0.44
CDX1-201ENST00000231656 NCBP2LA6PVI3 153 aaKnown RBP17.83■□□□□ 0.44
CDX1-201ENST00000231656 COX7A2P2O60397 106 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms