RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TMEM50AO95807 157 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 OPRK1P41145 380 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 SUB1P53999 127 aaKnown RBP eCLIP7.6□□□□□ -1.19
SCN1A-222ENST00000642141 TMEM268Q5VZI3 342 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 FAM90A2PQ658T7 463 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 LEMD1Q68G75 181 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 LYG2Q86SG7 212 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 SELENOHQ8IZQ5 122 aaKnown RBP7.6□□□□□ -1.19
SCN1A-222ENST00000642141 FAM24BQ8N5W8 94 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 DYNC2LI1Q8TCX1 351 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 GLYATL2Q8WU03 294 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 SMIM4Q8WVI0 70 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 GPR146Q96CH1 333 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 MS4A6AQ9H2W1 248 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 NAA60Q9H7X0 242 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 MAP6D1Q9H9H5 199 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 HEYLQ9NQ87 328 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-222ENST00000642141 MCUBQ9NWR8 336 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 CACNG5Q9UF02 275 aa7.6□□□□□ -1.19
SCN1A-222ENST00000642141 DNAH1Q9P2D7 4330 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 DNASE2O00115 360 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-222ENST00000642141 JTBO76095 146 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 CDS2O95674 445 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 AKAIN1P0CW23 69 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 BMI1P35226 326 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 RPL5P46777 297 aaKnown RBP7.59□□□□□ -1.19
SCN1A-222ENST00000642141 SPCS3P61009 180 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 TIGITQ495A1 244 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 ZNF600Q6ZNG1 722 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 Q6ZWC4 215 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 RAB2BQ8WUD1 216 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 TMEM230Q96A57 120 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 RNF183Q96D59 192 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 GALNT14Q96FL9 552 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 GINS3Q9BRX5 216 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 ZFAND3Q9H8U3 227 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-222ENST00000642141 RABAC1Q9UI14 185 aa7.59□□□□□ -1.19
SCN1A-222ENST00000642141 CRYM-AS1A6NIL9 109 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 CEBPZOSA8MTT3 80 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 UBE2CO00762 179 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 AKR1C4P17516 323 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 NPPCP23582 126 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 TNFSF8P32971 234 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 TMBIM6P55061 237 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 DEFB131AP59861 70 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 PAFAH1B2P68402 229 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 MRPS10P82664 201 aaKnown RBP7.58□□□□□ -1.2
SCN1A-222ENST00000642141 SSBP1Q04837 148 aaKnown RBP7.58□□□□□ -1.2
SCN1A-222ENST00000642141 PVRIGQ6DKI7 326 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 RBPMSQ93062 196 aaKnown RBP7.58□□□□□ -1.2
SCN1A-222ENST00000642141 CSTL1Q9H114 145 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 CCDC59Q9P031 241 aaKnown RBP7.58□□□□□ -1.2
SCN1A-222ENST00000642141 GPR132Q9UNW8 380 aa7.58□□□□□ -1.2
SCN1A-222ENST00000642141 KIR2DL5BA0A0G2JN68 375 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 KIR2DL5BA0A0G2JPC4 375 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 ANKRD20A5PA0PJZ0 165 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 FABP12A6NFH5 140 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 INS-IGF2F8WCM5 200 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 H3BMQ9 156 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 DEFB4AO15263 64 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 CLN5O75503 358 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 IGKV1-17P01599 117 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 RND2P52198 227 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 DHODHQ02127 395 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 TNFRSF9Q07011 255 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 RBMS2Q15434 407 aaKnown RBP7.57□□□□□ -1.2
SCN1A-222ENST00000642141 KIR2DL5AQ8N109 375 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 STXBP6Q8NFX7 210 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 OR4X1Q8NH49 305 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 KIR2DL5BQ8NHK3 375 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 MCFD2Q8NI22 146 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 METTL26Q96S19 204 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 PRRT1Q99946 306 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 SLIRPQ9GZT3 109 aaKnown RBP7.57□□□□□ -1.2
SCN1A-222ENST00000642141 VSIRQ9H7M9 311 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 TP53TG1Q9Y2A0 90 aa7.57□□□□□ -1.2
SCN1A-222ENST00000642141 EPPK1P58107 5090 aaKnown RBP7.57□□□□□ -1.2
SCN1A-222ENST00000642141 MPTX1A8MV57 137 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 ZNF701M0R085 212 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-222ENST00000642141 CORTO00230 105 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 CTDSPLO15194 276 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 GSTZ1O43708 216 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-222ENST00000642141 NOL3O60936 208 aaKnown RBP7.56□□□□□ -1.2
SCN1A-222ENST00000642141 B3GALNT1O75752 331 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 LY6G6CO95867 125 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 CA1P00915 261 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-222ENST00000642141 HTR2BP41595 481 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 CMC4P56277 68 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-222ENST00000642141 TMEM187Q14656 261 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 SURF2Q15527 256 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-222ENST00000642141 BSXQ3C1V8 233 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 PYDC2Q56P42 97 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 LYZL2Q7Z4W2 148 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 FAM219AQ8IW50 185 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 TMEM170AQ8WVE7 144 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 NPIPB3Q92617 1050 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 ACY3Q96HD9 319 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 RARRES2Q99969 163 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 RSL24D1Q9UHA3 163 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms