RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	IGF2BP2-AS1	Q96M15	143 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	MRPL20	Q9BYC9	149 aa	Known RBP	11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	RAB9B	Q9NP90	201 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	PSMB11	A5LHX3	300 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	NDUFS8	O00217	210 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	FCN3	O75636	299 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	FTH1P19	P0C7X4	201 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	C8orf88	P0DMB2	117 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	IRF2	P14316	349 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	CEACAM8	P31997	349 aa	Predicted RBP	11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	REG1B	P48304	166 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021		Q8N976	141 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	SLC35E1	Q96K37	410 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	C20orf144	Q9BQM9	153 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	TANC2	Q9HCD6	1990 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	RAI1	Q7Z5J4	1906 aa	Predicted RBP	11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	ISLR	O14498	428 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	CHRNB4	P30926	498 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	PPOX	P50336	477 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	CCL8	P80075	99 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	IBA57	Q5T440	356 aa	Known RBP	11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	SLC25A2	Q9BXI2	301 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	BET1L	Q9NYM9	111 aa		11.22	□□□□□ -0.61
PHGDH-233	ENST00000642021	KALRN	O60229	2985 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	TRBV9	A0A0B4J1U6	114 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	CCL3L1	P16619	93 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	DIAPH2-AS1	Q14236	149 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	OR1L8	Q8NGR8	309 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	OR5B3	Q8NH48	314 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	SSBP3	Q9BWW4	388 aa	Predicted RBP	11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	NDUFA4L2	Q9NRX3	87 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021	SERTAD4	Q9NUC0	356 aa		11.21	□□□□□ -0.61
PHGDH-233	ENST00000642021		A0A1W2PRE2	83 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	BMPR1B	O00238	502 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	PYY	P10082	97 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	KRTDAP	P60985	99 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	C10orf55	Q5SWW7	151 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	PIP4P1	Q86T03	277 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	SIGLECL1	Q8N7X8	197 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	MIEN1	Q9BRT3	115 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	TBL2	Q9Y4P3	447 aa	Known RBP	11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	TTC28	Q96AY4	2481 aa		11.21	□□□□□ -0.62
PHGDH-233	ENST00000642021	SMIM27	A0A1W2PRY6	76 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021		A0A1W2PS18	150 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	TAS2R45	P59539	299 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	PNKD	Q8N490	385 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	WFDC12	Q8WWY7	111 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	HARBI1	Q96MB7	349 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	OTOGL	Q3ZCN5	2332 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	CGB1	A6NKQ9	187 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	TM4SF5	O14894	197 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	SIAH2	O43255	324 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	RPLP1	P05386	114 aa	Known RBP	11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	SRI	P30626	198 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	BRS3	P32247	399 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	ZNF833P	Q6ZTB9	187 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	NRN1	Q9NPD7	142 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021	NAV3	Q8IVL0	2385 aa		11.2	□□□□□ -0.62
PHGDH-233	ENST00000642021		H0YJW9	148 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	ZNF253	O75346	499 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	WT1-AS	Q06250	92 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	PATE2	Q6UY27	113 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	VAMP8	Q9BV40	100 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	C19orf24	Q9BVV8	132 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	COMMD5	Q9GZQ3	224 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	DNAJC4	Q9NNZ3	241 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	MRPL36	Q9P0J6	103 aa	Known RBP	11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	CDC42EP3	Q9UKI2	254 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	DYSF	O75923	2080 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	TRAV34	A0A0B4J273	112 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	hADV38S2	A0JD32	116 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	PMCH	P20382	165 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	CD40	P25942	277 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	AMT	P48728	403 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	UBE2L3	P68036	154 aa	Known RBP	11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	TMEM183B	Q1AE95	376 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	WDR73	Q6P4I2	378 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	C1orf122	Q6ZSJ8	110 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	S100A7A	Q86SG5	101 aa		11.19	□□□□□ -0.62
PHGDH-233	ENST00000642021	BSN	Q9UPA5	3926 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	MT-ND6	P03923	174 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	SELENOV	P59797	346 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	RPL8	P62917	257 aa	Known RBP	11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	TEX36	Q5VZQ5	186 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	RUSC1-AS1	Q66K80	236 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	FAM19A2	Q8N3H0	131 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	ZADH2	Q8N4Q0	377 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	LINC00312	Q9Y6C7	94 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	PLXNB1	O43157	2135 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	ATM	Q13315	3056 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021		K7EM74	188 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	CEACAM4	O75871	244 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	SLA	Q13239	276 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	LHFPL4	Q7Z7J7	247 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	OSR1	Q8TAX0	266 aa	Predicted RBP	11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	NPIPB3	Q92617	1050 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	ZNF355P	Q9NSJ1	428 aa		11.18	□□□□□ -0.62
PHGDH-233	ENST00000642021	DIRC3	C9JPN6	131 aa		11.17	□□□□□ -0.62
PHGDH-233	ENST00000642021	DLL1	O00548	723 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms