RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 TNFRSF9Q07011 255 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 IL18Q14116 193 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 BSXQ3C1V8 233 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 CLVS1Q8IUQ0 354 aaPredicted RBP11.7□□□□□ -0.54
VRK3-221ENST00000600284 DYNC2LI1Q8TCX1 351 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 GLYATL2Q8WU03 294 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 RBPMSQ93062 196 aaKnown RBP11.7□□□□□ -0.54
VRK3-221ENST00000600284 RNF183Q96D59 192 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 PRRT1Q99946 306 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 VSIRQ9H7M9 311 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 NAA60Q9H7X0 242 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 MAP6D1Q9H9H5 199 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.7□□□□□ -0.54
VRK3-221ENST00000600284 CACFD1Q9UGQ2 172 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 DNAH1Q9P2D7 4330 aa11.69□□□□□ -0.54
VRK3-221ENST00000600284 CLN5O75503 358 aa11.69□□□□□ -0.54
VRK3-221ENST00000600284 ATF4P18848 351 aaPredicted RBP11.69□□□□□ -0.54
VRK3-221ENST00000600284 FAAP20Q6NZ36 180 aa11.69□□□□□ -0.54
VRK3-221ENST00000600284 Q6ZRM9 215 aa11.69□□□□□ -0.54
VRK3-221ENST00000600284 OR4X1Q8NH49 305 aa11.69□□□□□ -0.54
VRK3-221ENST00000600284 RSL24D1Q9UHA3 163 aaKnown RBP11.69□□□□□ -0.54
VRK3-221ENST00000600284 PUS1Q9Y606 427 aaKnown RBP eCLIP11.69□□□□□ -0.54
VRK3-221ENST00000600284 IGHV3-49A0A0A0MS15 119 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 TRAV2A0A0B4J234 112 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 CRYM-AS1A6NIL9 109 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 GSTZ1O43708 216 aaPredicted RBP11.68□□□□□ -0.54
VRK3-221ENST00000600284 HTR2BP41595 481 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 DEFB135Q30KP9 77 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 TCF24Q7RTU0 167 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 SELENOHQ8IZQ5 122 aaKnown RBP11.68□□□□□ -0.54
VRK3-221ENST00000600284 OR4C16Q8NGL9 310 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 SCGB3A2Q96PL1 93 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 TMEM231Q9H6L2 316 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 ZFAND3Q9H8U3 227 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 TMEM56-RWDD3S4R434 201 aa11.68□□□□□ -0.54
VRK3-221ENST00000600284 TRAV30A0A087WSZ9 112 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 RPS10-NUDT3A0A1W2PQS6 291 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 A0A1W2PS18 150 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 ANKRD20A5PA0PJZ0 165 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 DFFBO76075 338 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 RPL35AP18077 110 aaKnown RBP11.67□□□□□ -0.54
VRK3-221ENST00000600284 NPPCP23582 126 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 OPRK1P41145 380 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 LYG2Q86SG7 212 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 APRG1Q8IVJ8 170 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 LHFPL5Q8TAF8 219 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 ST8SIA2Q92186 375 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 IL22RA2Q969J5 263 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 CSTL1Q9H114 145 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 FNDC4Q9H6D8 234 aaPredicted RBP11.67□□□□□ -0.54
VRK3-221ENST00000600284 SCP2D1Q9UJQ7 156 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 KCNIP3Q9Y2W7 256 aa11.67□□□□□ -0.54
VRK3-221ENST00000600284 IGHV3OR16-13A0A075B7E8 117 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 IGHV3-74A0A0B4J1X5 117 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 A0A0J9YWU9 116 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 A0A1B0GU03 582 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 TFPI2P48307 235 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 C2orf83Q53S99 150 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 TMEM217Q8N7C4 229 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 OR51S1Q8NGJ8 323 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 GPR146Q96CH1 333 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 HYDINQ4G0P3 5121 aa11.66□□□□□ -0.54
VRK3-221ENST00000600284 IGKV3-7A0A075B6H7 116 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 DNASE2O00115 360 aaPredicted RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 NOL3O60936 208 aaKnown RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 APOHP02749 345 aaPredicted RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 SLC25A4P12235 298 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 MLANAQ16655 118 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 TMEM268Q5VZI3 342 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 NOXA1Q86UR1 476 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 LILRB2Q8N423 598 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 GBGT1Q8N5D6 347 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 RNASEH2CQ8TDP1 164 aaKnown RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 GATAD1Q8WUU5 269 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 TMEM230Q96A57 120 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 SOSTQ9BQB4 213 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 SLIRPQ9GZT3 109 aaKnown RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 MS4A6AQ9H2W1 248 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 HEYLQ9NQ87 328 aaPredicted RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 MRPL36Q9P0J6 103 aaKnown RBP11.65□□□□□ -0.54
VRK3-221ENST00000600284 CACNG5Q9UF02 275 aa11.65□□□□□ -0.54
VRK3-221ENST00000600284 PLECQ15149 4684 aaKnown RBP11.65□□□□□ -0.55
VRK3-221ENST00000600284 MPTX1A8MV57 137 aa11.64□□□□□ -0.55
VRK3-221ENST00000600284 CRYBB3P26998 211 aa11.64□□□□□ -0.55
VRK3-221ENST00000600284 NARS2Q96I59 477 aaKnown RBP11.64□□□□□ -0.55
VRK3-221ENST00000600284 METTL26Q96S19 204 aa11.64□□□□□ -0.55
VRK3-221ENST00000600284 NUPR2A6NF83 97 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 FABP12A6NFH5 140 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 CEBPZOSA8MTT3 80 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 IGKV1-17P01599 117 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 TNFSF8P32971 234 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 RPL11P62913 178 aaKnown RBP11.63□□□□□ -0.55
VRK3-221ENST00000600284 TMEM187Q14656 261 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 ZNF124Q15973 351 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 ETFRF1Q6IPR1 90 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 SLC24A4Q8NFF2 622 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 OR1S2Q8NGQ3 325 aa11.63□□□□□ -0.55
VRK3-221ENST00000600284 A0A0B4J2A0 478 aa11.62□□□□□ -0.55
VRK3-221ENST00000600284 PIGBOS1A0A0B4J2F0 54 aa11.62□□□□□ -0.55
VRK3-221ENST00000600284 CXorf65A6NEN9 183 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms