RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 C6orf52Q5T4I8 152 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 C22orf39Q6P5X5 142 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 PRSS54Q6PEW0 395 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 HRCT1Q6UXD1 115 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 RPS27LQ71UM5 84 aaKnown RBP2.42□□□□□ -2.02
NUP88-209ENST00000574855 LINC00596Q86U02 117 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 BAP18Q8IXM2 172 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 PDZD9Q8IXQ8 264 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 ZNF664Q8N3J9 261 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 FNDC9Q8TBE3 224 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 SLC25A40Q8TBP6 338 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 NAT14Q8WUY8 206 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 SLC7A6Q92536 515 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 ARL11Q969Q4 196 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 CARD19Q96LW7 228 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 C18orf15Q96N68 181 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 PDCD10Q9BUL8 212 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 SLC25A2Q9BXI2 301 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 SLC25A22Q9H936 323 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 KCNIP2Q9NS61 270 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 DHRS4-AS1Q9P1J3 65 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 NAT8BQ9UHF3 227 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 ZNF230Q9UIE0 474 aaPredicted RBP2.42□□□□□ -2.02
NUP88-209ENST00000574855 RPUSD1Q9UJJ7 312 aaKnown RBP2.42□□□□□ -2.02
NUP88-209ENST00000574855 TNFSF18Q9UNG2 199 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 HIGD1AQ9Y241 93 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 CYSLTR1Q9Y271 337 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 HS3ST2Q9Y278 367 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 MED31Q9Y3C7 131 aa2.42□□□□□ -2.02
NUP88-209ENST00000574855 ZNF706Q9Y5V0 76 aaPredicted RBP2.42□□□□□ -2.02
NUP88-209ENST00000574855 NUP210LQ5VU65 1888 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 EP400Q96L91 3159 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 COL4A4P53420 1690 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 NUP205Q92621 2012 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 IGLV3-16A0A075B6K0 115 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 CD300LBA8K4G0 201 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 FABP5P3A8MUU1 101 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 H7BYZ3 331 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 M0R2Z0 102 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 M0R381 172 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 DNASE2O00115 360 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 FXYD1O00168 92 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 LGALS9O00182 355 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 PEX7O00628 323 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 CCL16O15467 120 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 TRAF3IP2O43734 574 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 COX7A2P2O60397 106 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 DUSP14O95147 198 aaKnown RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 APOMO95445 188 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 FSTL3O95633 263 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 OR2H2O95918 312 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 CXorf1O96002 111 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 IGLV2-8P01709 118 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 SCTP09683 121 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 SMIM17P0DL12 118 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 PSG2P11465 335 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 FOXA1P55317 472 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 LINC00313P59037 77 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 PPP1CAP62136 330 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 NCS1P62166 190 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 RPL38P63173 70 aaKnown RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 MRPS10P82664 201 aaKnown RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 SLC38A11Q08AI6 406 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 PRR30Q53SZ7 412 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 TCEAL5Q5H9L2 206 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 HES3Q5TGS1 186 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 MARCH3Q86UD3 253 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 MKXQ8IYA7 352 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 C8orf59Q8N0T1 100 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 NUP35Q8NFH5 326 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 FRZBQ92765 325 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 PHYHIPLQ96FC7 376 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 ERMAPQ96PL5 475 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 NMNAT3Q96T66 252 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 GTSF1LQ9H1H1 148 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 Q9H3A6 140 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 CXorf21Q9HAI6 301 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 SCN3BQ9NY72 215 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 RNF11Q9Y3C5 154 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 AMMECR1Q9Y4X0 333 aaPredicted RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 ZNF638Q14966 1978 aaKnown RBP2.41□□□□□ -2.02
NUP88-209ENST00000574855 CASP8AP2Q9UKL3 1982 aa2.41□□□□□ -2.02
NUP88-209ENST00000574855 TRBV19A0A075B6N1 114 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 A0A0X1KG70 313 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 ZNF705GA8MUZ8 300 aaPredicted RBP2.4□□□□□ -2.03
NUP88-209ENST00000574855 NDUFC2-KCTD14E9PQ53 114 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 KRTAP4-16G5E9R7 235 aaPredicted RBP2.4□□□□□ -2.03
NUP88-209ENST00000574855 CORTO00230 105 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 CD5LO43866 347 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 MRPS14O60783 128 aaKnown RBP2.4□□□□□ -2.03
NUP88-209ENST00000574855 ZNF253O75346 499 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 TNFSF13O75888 250 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 NRASP01111 189 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 IFNA7P01567 189 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 BGLAPP02818 100 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 ADRA2AP08913 450 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 GABRA3P34903 492 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 LPAR6P43657 344 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 CXCL12P48061 93 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 RPS25P62851 125 aaKnown RBP2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms